Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq5998 123 8e-24 >seq5998 Length=1361 Score = 123 bits (136), Expect = 8e-24 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39082 AAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATG 39141 ||||||||||| | |||||||||||| || || || ||||||||||| ||||| || | Sbjct 711 AAGTCGATGTCAAAGTCGGGCATGGACACGCGTTCCGGGTTCAGGAAGCGCTCAAACAGC 770 Query 39142 AGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCA 39201 | || || || || || ||||| || || | | ||| || ||| |||||| Sbjct 771 AAGTTGTACTTGAGTGGATCAAGATCGGTAATGCCCAAGCTGTAGGCAACCAATGAGCCA 830 Query 39202 GCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAG 39261 || |||| |||||||| || || ||| |||||| || | ||| |||||| ||| ||| Sbjct 831 GCACCAGATCCGCGCCCCGGCCCTACCGGCACGCCATTGTTCTTGGCCCAGTTGATAAAG 890 Query 39262 TCGGCGACGACGAGGAAGTACGACGGG-AACCCCATCTGGTTGATCATGTCG 39312 || || |||| || ||||| | |||| || |||||||| | || ||| || Sbjct 891 TCTGCCACGATCAGAAAGTA-GCCGGGAAAGCCCATCTGAATAATGATGCCG 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159697593695106