Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq5850 95.1 5e-15 >seq5850 Length=1395 Score = 95.1 bits (104), Expect = 5e-15 Identities = 194/282 (69%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 53081 AGCAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTG--TGTCGACCACCT 53138 ||||| |||||||||||||||| ||||| || ||||||||| |||| ||||| | || Sbjct 754 AGCAGATCGGCACGCTCGGCGGCGGCAACCATTTCATCGAGGTGTGTCTGTCGGACGCC- 812 Query 53139 TGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACAAGATCGCGCA 53198 ||| || ||| || | ||||||||||| || || | ||||| | | ||| | Sbjct 813 -GACGAGGTCTGGCTGATGCTGCACTCCGGGTCACGCAACATCGGCAAGGAACTGGCGGA 871 Query 53199 GCGGCATATCGCTGCGGCGCAGGGCTACTGCCACAACAACGGCCTGCAGGTGCCTCACCC 53258 |||||| ||||| | ||||| |||| ||||| | |||| || || | || | | Sbjct 872 GCGGCACATCGCGGTGGCGC-GGGC-CCTGCCGC-ACAA---CCAGCGGCTGGTCGATCG 925 Query 53259 TGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACATCGTCGAGTTGCG 53318 |||||| ||| || ||| |||| ||| | || |||| | ||| || Sbjct 926 TGATCTCGCGGTGTTCCTCGCAGGCAGCAAGGAGATGGATGCGTATCGCCACGACCTGAC 985 Query 53319 GTGGGCGCAGCGGTTCGCGTACCTGAACCGTGCCGAGATGCT 53360 |||||||||| || |||| || |||||| |||| ||||| Sbjct 986 GTGGGCGCAGGAGTACGCGGCCCGGAACCGCGCCGTCATGCT 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188823982575444