Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_028936.1
Length=59052
Score E
Sequences producing significant alignments: (Bits) Value
seq5850 95.1 5e-15
>seq5850
Length=1395
Score = 95.1 bits (104), Expect = 5e-15
Identities = 194/282 (69%), Gaps = 10/282 (4%)
Strand=Plus/Plus
Query 53081 AGCAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTG--TGTCGACCACCT 53138
||||| |||||||||||||||| ||||| || ||||||||| |||| ||||| | ||
Sbjct 754 AGCAGATCGGCACGCTCGGCGGCGGCAACCATTTCATCGAGGTGTGTCTGTCGGACGCC- 812
Query 53139 TGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACAAGATCGCGCA 53198
||| || ||| || | ||||||||||| || || | ||||| | | ||| |
Sbjct 813 -GACGAGGTCTGGCTGATGCTGCACTCCGGGTCACGCAACATCGGCAAGGAACTGGCGGA 871
Query 53199 GCGGCATATCGCTGCGGCGCAGGGCTACTGCCACAACAACGGCCTGCAGGTGCCTCACCC 53258
|||||| ||||| | ||||| |||| ||||| | |||| || || | || | |
Sbjct 872 GCGGCACATCGCGGTGGCGC-GGGC-CCTGCCGC-ACAA---CCAGCGGCTGGTCGATCG 925
Query 53259 TGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACATCGTCGAGTTGCG 53318
|||||| ||| || ||| |||| ||| | || |||| | ||| ||
Sbjct 926 TGATCTCGCGGTGTTCCTCGCAGGCAGCAAGGAGATGGATGCGTATCGCCACGACCTGAC 985
Query 53319 GTGGGCGCAGCGGTTCGCGTACCTGAACCGTGCCGAGATGCT 53360
|||||||||| || |||| || |||||| |||| |||||
Sbjct 986 GTGGGCGCAGGAGTACGCGGCCCGGAACCGCGCCGTCATGCT 1027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 188823982575444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |