Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_028940.1
Length=170286
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 84.2 2e-11
>seq2003
Length=7520
Score = 84.2 bits (92), Expect = 2e-11
Identities = 295/452 (65%), Gaps = 14/452 (3%)
Strand=Plus/Minus
Query 145249 TTGATTTGAATTCCATAATCAAGATGCCTGATTCGATTTTCTTCTACGCCTTTGTTGTTT 145308
||||| || | |||||||| ||||| | | || |||||||||||||| |||||||
Sbjct 7083 TTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTT 7024
Query 145309 TTAAGGACTAAAAGATTTTCTGCTTCAAGGTGCCACATTGGGTAATATAATGTTGCCGCA 145368
|| || || | || ||| ||||||||||||||| ||||| | || || |||||
Sbjct 7023 TTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCC 6964
Query 145369 CCACCACGAATTCCACCTTGAGAACAACTTTTAACAGAAGCCAAGTGAGTTTTCCAGAAT 145428
||||| || | || || || || || ||| || | || | | ||| ||||
Sbjct 6963 CCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAAC 6904
Query 145429 GGAATAACACCCGTATGCCGCACTTCACCGTGACCAATCTTAGAACCTTCAGCGC---GA 145485
|| | ||| ||||| || |||| ||| || |||| || |||||| ||
Sbjct 6903 GGCAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCC--CAGCGCGCGGA 6846
Query 145486 TACATTCCGGCGTTAACACCAATACCAGCGCGTTTACTGATATATTTGATAAT-GCTTTC 145544
| | || ||||| || || || || ||||||| || ||| || | || || |
Sbjct 6845 TGC-GGCCCGCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTG 6787
Query 145545 GTTCACTTTG--TTAATTGAATTTAGCGAATCGCCACCTTCAATTACTACACATGAACTG 145602
|| ||| || || | || || ||| || || | ||| || || |||
Sbjct 6786 GT---GGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTG 6730
Query 145603 AATTGACGAGTTGGTGTACGTACACCTGCCATAATAGGAGTAGGCAAAGAAAT-TTGACG 145661
|| || || || || ||||| ||||| ||||| ||||| ||||||| || || |||| |
Sbjct 6729 AACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAG 6670
Query 145662 TTTTGATACAGCATTATAAAAACGAATAATGT 145693
| || || |||| ||||| || | ||||
Sbjct 6669 -GTAGACACCGCATCGTAAAAGCGCTTGATGT 6639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 544723984255280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |