Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq2003 84.2 2e-11 >seq2003 Length=7520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 295/452 (65%), Gaps = 14/452 (3%) Strand=Plus/Minus Query 145249 TTGATTTGAATTCCATAATCAAGATGCCTGATTCGATTTTCTTCTACGCCTTTGTTGTTT 145308 ||||| || | |||||||| ||||| | | || |||||||||||||| ||||||| Sbjct 7083 TTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTT 7024 Query 145309 TTAAGGACTAAAAGATTTTCTGCTTCAAGGTGCCACATTGGGTAATATAATGTTGCCGCA 145368 || || || | || ||| ||||||||||||||| ||||| | || || ||||| Sbjct 7023 TTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCC 6964 Query 145369 CCACCACGAATTCCACCTTGAGAACAACTTTTAACAGAAGCCAAGTGAGTTTTCCAGAAT 145428 ||||| || | || || || || || ||| || | || | | ||| |||| Sbjct 6963 CCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAAC 6904 Query 145429 GGAATAACACCCGTATGCCGCACTTCACCGTGACCAATCTTAGAACCTTCAGCGC---GA 145485 || | ||| ||||| || |||| ||| || |||| || |||||| || Sbjct 6903 GGCAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCC--CAGCGCGCGGA 6846 Query 145486 TACATTCCGGCGTTAACACCAATACCAGCGCGTTTACTGATATATTTGATAAT-GCTTTC 145544 | | || ||||| || || || || ||||||| || ||| || | || || | Sbjct 6845 TGC-GGCCCGCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTG 6787 Query 145545 GTTCACTTTG--TTAATTGAATTTAGCGAATCGCCACCTTCAATTACTACACATGAACTG 145602 || ||| || || | || || ||| || || | ||| || || ||| Sbjct 6786 GT---GGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTG 6730 Query 145603 AATTGACGAGTTGGTGTACGTACACCTGCCATAATAGGAGTAGGCAAAGAAAT-TTGACG 145661 || || || || || ||||| ||||| ||||| ||||| ||||||| || || |||| | Sbjct 6729 AACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAG 6670 Query 145662 TTTTGATACAGCATTATAAAAACGAATAATGT 145693 | || || |||| ||||| || | |||| Sbjct 6669 -GTAGACACCGCATCGTAAAAGCGCTTGATGT 6639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544723984255280