Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028957.1 Length=171541 Score E Sequences producing significant alignments: (Bits) Value seq2003 104 3e-17 >seq2003 Length=7520 Score = 104 bits (114), Expect = 3e-17 Identities = 321/497 (65%), Gaps = 0/497 (0%) Strand=Plus/Minus Query 142782 TCATGTGGACTAAACAGAGTGATGTAATCATTCTTAGCCAGACGTTCCATCATCAAGTTA 142841 ||||| || |||||||||||||| | ||| ||| || | ||||| | Sbjct 7143 TCATGCGGTGAAAACAGAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGG 7084 Query 142842 TTCAACTGGACGCCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTC 142901 || | ||| |||||||| || | ||| | | ||||||||||| ||||| |||||| Sbjct 7083 TTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTT 7024 Query 142902 TTCAGAACGAGCAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCAGCG 142961 ||||| || |||| ||| ||||| | ||||| || || || | || || || Sbjct 7023 TTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCC 6964 Query 142962 CCGCCCCGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAAC 143021 || ||||| | || || || || |||||||| || || | ||||| |||| ||||| Sbjct 6963 CCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAAC 6904 Query 143022 GGAATAACACCAGTATGACGAACTTCACCCATACCGATTTTCGAACCTTCAGCACGAATC 143081 || | ||| ||||| | |||| || || || | || || || || Sbjct 6903 GGCAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATG 6844 Query 143082 ATACCAACGTTGATGCCGATACCCGCACGCTTACTGATATATTCGATGATTGAATTGGCA 143141 || |||||| ||| || || || || | || ||| | | ||| | ||| Sbjct 6843 CGGCCCGCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTGGTG 6784 Query 143142 GTCTTATTGATTGACTTCAGGGAGTCTGCAGCTTCGATAACCACGCAGGAACTGAACTGC 143201 || |||||| | |||| ||| || ||||| | |||||||| |||||||| Sbjct 6783 GTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGG 6724 Query 143202 CGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAACCTGTCTTGTGGAT 143261 || ||||| || | | || ||||||||||| || |||| ||| | || || || Sbjct 6723 CGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAGGTAGAC 6664 Query 143262 ACTGCATCATAAAAACG 143278 || ||||| ||||| || Sbjct 6663 ACCGCATCGTAAAAGCG 6647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548739518248680