Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_028957.1
Length=171541
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 104 3e-17
>seq2003
Length=7520
Score = 104 bits (114), Expect = 3e-17
Identities = 321/497 (65%), Gaps = 0/497 (0%)
Strand=Plus/Minus
Query 142782 TCATGTGGACTAAACAGAGTGATGTAATCATTCTTAGCCAGACGTTCCATCATCAAGTTA 142841
||||| || |||||||||||||| | ||| ||| || | ||||| |
Sbjct 7143 TCATGCGGTGAAAACAGAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGG 7084
Query 142842 TTCAACTGGACGCCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTC 142901
|| | ||| |||||||| || | ||| | | ||||||||||| ||||| ||||||
Sbjct 7083 TTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTT 7024
Query 142902 TTCAGAACGAGCAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCAGCG 142961
||||| || |||| ||| ||||| | ||||| || || || | || || ||
Sbjct 7023 TTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCC 6964
Query 142962 CCGCCCCGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAAC 143021
|| ||||| | || || || || |||||||| || || | ||||| |||| |||||
Sbjct 6963 CCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAAC 6904
Query 143022 GGAATAACACCAGTATGACGAACTTCACCCATACCGATTTTCGAACCTTCAGCACGAATC 143081
|| | ||| ||||| | |||| || || || | || || || ||
Sbjct 6903 GGCAGGCAACCGGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATG 6844
Query 143082 ATACCAACGTTGATGCCGATACCCGCACGCTTACTGATATATTCGATGATTGAATTGGCA 143141
|| |||||| ||| || || || || | || ||| | | ||| | |||
Sbjct 6843 CGGCCCGCGTTGACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTGGTG 6784
Query 143142 GTCTTATTGATTGACTTCAGGGAGTCTGCAGCTTCGATAACCACGCAGGAACTGAACTGC 143201
|| |||||| | |||| ||| || ||||| | |||||||| ||||||||
Sbjct 6783 GTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGG 6724
Query 143202 CGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAACCTGTCTTGTGGAT 143261
|| ||||| || | | || ||||||||||| || |||| ||| | || || ||
Sbjct 6723 CGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAGGTAGAC 6664
Query 143262 ACTGCATCATAAAAACG 143278
|| ||||| ||||| ||
Sbjct 6663 ACCGCATCGTAAAAGCG 6647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548739518248680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |