Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq5998 120 1e-22 >seq5998 Length=1361 Score = 120 bits (132), Expect = 1e-22 Identities = 259/381 (68%), Gaps = 16/381 (4%) Strand=Plus/Plus Query 39373 AAAGGGCTTGTCCAGCACGCGGGCCGCGTCCT---TCATCGCGTTGCGGGCCTTGATCCT 39429 ||| ||| ||| ||||||||| || | ||| ||| ||| || |||| || ||| Sbjct 569 AAAAGGCAGGTCAAGCACGCGGCCCACATCCCGAATCACCGCCTTTGCGGCCATGGTCC- 627 Query 39430 GCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGAT 39489 || | || |||||||| | |||| | | ||| || || ||||||| || Sbjct 628 --CGAAGGTGGCGATCTGCGAGACCGAGGCCAGGCCATATTTGCGCTTGACGTA----AT 681 Query 39490 CAC-GTCGCCACGGCGACGGTCATCG---AAGTCGATGTCCACGTCGGGCATGGAGACGC 39545 || | ||| | ||| | || | | ||||||||||| | |||||||||||| |||| Sbjct 682 CAATGACGCGATCGCGGCCCTCTTGGCAAAAGTCGATGTCAAAGTCGGGCATGGACACGC 741 Query 39546 GCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGA 39605 | || ||||||||||| ||||| || | | || || || || || ||||| | Sbjct 742 GTTCCGGGTTCAGGAAGCGCTCAAACAGCAAGTTGTACTTGAGTGGATCAAGATCGGTAA 801 Query 39606 TCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACA 39665 | || | | ||| || ||| |||||||| |||| || ||||| || || ||| || Sbjct 802 TGCCCAAGCTGTAGGCAACCAATGAGCCAGCACCAGATCCGCGCCCCGGCCCTACCGGCA 861 Query 39666 CACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGG-AAC 39724 | || || | ||| |||||| ||| ||||| || |||| || ||||| | |||| || Sbjct 862 CGCCATTGTTCTTGGCCCAGTTGATAAAGTCTGCCACGATCAGAAAGTA-GCCGGGAAAG 920 Query 39725 CCCATCTGGTTGATCATGTCG 39745 |||||||| | || ||| || Sbjct 921 CCCATCTGAATAATGATGCCG 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160222335843450