Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_029013.1
Length=177688
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 223 4e-53
seq3915 102 9e-17
>seq2003
Length=7520
Score = 223 bits (246), Expect = 4e-53
Identities = 324/458 (71%), Gaps = 0/458 (0%)
Strand=Plus/Minus
Query 77136 AACAGTGTGATGTAATCGTTATTGATTAAACGCTTATACATCAAATCGTTAAGCTGAACG 77195
||||| ||||||| | | ||||| | |||| ||||||| ||| | ||| |||
Sbjct 7131 AACAGAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGGTTGATCTGCACG 7072
Query 77196 CCATAATCCAGGTGACGAATACGGTTATTCTCAACACCTTTGTTGTTTTTCAGAACCAGC 77255
|||||||| || ||||| | |||||| | || || || |||||||||||| ||||||
Sbjct 7071 CCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGC 7012
Query 77256 AGGTTTTCAACTTCCAAATGCCAGATCGGATAATACAACGTTGCAGCACCACCACGAACG 77315
|| ||| ||||| | ||||| | ||| || ||||||| || || ||||| || ||
Sbjct 7011 AGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCACA 6952
Query 77316 CCACCTTGTGAACAGGATTTAACCGCTGTCTGAATATGTTTCCAGAACGGGATCACGCCT 77375
|| || || || |||||||| ||||| | ||| | |||| ||||||| | ||
Sbjct 6951 CCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAACGGCAGGCAACCG 6892
Query 77376 GTATGTACTGCTTCACCACCACGGATTTTAGAACCCATTGCGCGAATGTGTCCAGCATTA 77435
|||||| ||||| || ||||| || | |||| ||||| ||| | || || ||
Sbjct 6891 GTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATGCGGCCCGCGTTG 6832
Query 77436 ACACCGATACCCGCGCGTTGTGAAATATACTTCACGATCGCAGAGGTTACAGCATTCAGA 77495
|| || || || |||||||| || | ||||||||||||||| ||| ||||| |
Sbjct 6831 ACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTGGTGGTTGCATTGATG 6772
Query 77496 GAACCCAGTGAATCACCTGATTCAATCACTACGCAACTGGAAAACTGACGCGTAGGAGTA 77555
|||| ||| | | || |||| |||||| | ||||| ||||||||||||
Sbjct 6771 CTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGCGCGTAGGAGTA 6712
Query 77556 CGCACACCCGCCATAATAGGCGTAGGTAACGACAGCTT 77593
|||||||| ||||| ||||||||||| | ||| | |||
Sbjct 6711 CGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTT 6674
>seq3915
Length=2367
Score = 102 bits (112), Expect = 9e-17
Identities = 188/270 (70%), Gaps = 8/270 (3%)
Strand=Plus/Plus
Query 75570 AAAGCCCATGTTTCGATCCACGTTTCCA--TTGAAACATCAGAGGCAATCGGGAGAAACG 75627
|| ||||| || |||||||| ||||||| | | || | | | | ||| | || |
Sbjct 749 AACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGGCAATGACA--CCAGCGGCAACAAGG 806
Query 75628 CCAGGTTAGGGCCGCGTCCCTGAATGGTATCTAACAGGGTTTGATATTGCAGGTTAGA-A 75686
||| |||||||| || ||||| |||| ||| | ||| || ||||| | |||||| |
Sbjct 807 CCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAGCGTCTGATACTTCAGGTTGCTGA 866
Query 75687 TCAAAA-ATGATTTTTTCGTGTTCCGGCATTTTTGCATACTGCATACGGTCTATCGACAG 75745
| |||| ||| |||| | || || |||| | ||| | |||||| |||||
Sbjct 867 TGAAAATATGCTTTT--CATGCTCGGGCAGGCCTTGATAGTCAGCGCGGTCTTGCGACAC 924
Query 75746 ATCCACTTCTTCCGGTCGCCAGAAGAATGACAGTTGTTTTTCAGTCAAAGTTTCGAATAC 75805
||| |||||||| || ||||||||||| || |||||||| || ||| | ||||| ||
Sbjct 925 ATCGACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTTTCTCGATCAGCTTCTCGAACAC 984
Query 75806 GCGATGTTTTTGTTCTTCATATCGGGCAAC 75835
||| ||| |||| ||||| || || ||
Sbjct 985 CGGATATTTCTGTTGGTCATACCGCGCCAC 1014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568407635744640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |