Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq2003 223 4e-53 seq3915 102 9e-17 >seq2003 Length=7520 Score = 223 bits (246), Expect = 4e-53 Identities = 324/458 (71%), Gaps = 0/458 (0%) Strand=Plus/Minus Query 77136 AACAGTGTGATGTAATCGTTATTGATTAAACGCTTATACATCAAATCGTTAAGCTGAACG 77195 ||||| ||||||| | | ||||| | |||| ||||||| ||| | ||| ||| Sbjct 7131 AACAGAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGGTTGATCTGCACG 7072 Query 77196 CCATAATCCAGGTGACGAATACGGTTATTCTCAACACCTTTGTTGTTTTTCAGAACCAGC 77255 |||||||| || ||||| | |||||| | || || || |||||||||||| |||||| Sbjct 7071 CCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGC 7012 Query 77256 AGGTTTTCAACTTCCAAATGCCAGATCGGATAATACAACGTTGCAGCACCACCACGAACG 77315 || ||| ||||| | ||||| | ||| || ||||||| || || ||||| || || Sbjct 7011 AGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCACA 6952 Query 77316 CCACCTTGTGAACAGGATTTAACCGCTGTCTGAATATGTTTCCAGAACGGGATCACGCCT 77375 || || || || |||||||| ||||| | ||| | |||| ||||||| | || Sbjct 6951 CCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAACGGCAGGCAACCG 6892 Query 77376 GTATGTACTGCTTCACCACCACGGATTTTAGAACCCATTGCGCGAATGTGTCCAGCATTA 77435 |||||| ||||| || ||||| || | |||| ||||| ||| | || || || Sbjct 6891 GTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATGCGGCCCGCGTTG 6832 Query 77436 ACACCGATACCCGCGCGTTGTGAAATATACTTCACGATCGCAGAGGTTACAGCATTCAGA 77495 || || || || |||||||| || | ||||||||||||||| ||| ||||| | Sbjct 6831 ACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCGCGCTGGTGGTTGCATTGATG 6772 Query 77496 GAACCCAGTGAATCACCTGATTCAATCACTACGCAACTGGAAAACTGACGCGTAGGAGTA 77555 |||| ||| | | || |||| |||||| | ||||| |||||||||||| Sbjct 6771 CTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGCGCGTAGGAGTA 6712 Query 77556 CGCACACCCGCCATAATAGGCGTAGGTAACGACAGCTT 77593 |||||||| ||||| ||||||||||| | ||| | ||| Sbjct 6711 CGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTT 6674 >seq3915 Length=2367 Score = 102 bits (112), Expect = 9e-17 Identities = 188/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 75570 AAAGCCCATGTTTCGATCCACGTTTCCA--TTGAAACATCAGAGGCAATCGGGAGAAACG 75627 || ||||| || |||||||| ||||||| | | || | | | | ||| | || | Sbjct 749 AACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGGCAATGACA--CCAGCGGCAACAAGG 806 Query 75628 CCAGGTTAGGGCCGCGTCCCTGAATGGTATCTAACAGGGTTTGATATTGCAGGTTAGA-A 75686 ||| |||||||| || ||||| |||| ||| | ||| || ||||| | |||||| | Sbjct 807 CCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAGCGTCTGATACTTCAGGTTGCTGA 866 Query 75687 TCAAAA-ATGATTTTTTCGTGTTCCGGCATTTTTGCATACTGCATACGGTCTATCGACAG 75745 | |||| ||| |||| | || || |||| | ||| | |||||| ||||| Sbjct 867 TGAAAATATGCTTTT--CATGCTCGGGCAGGCCTTGATAGTCAGCGCGGTCTTGCGACAC 924 Query 75746 ATCCACTTCTTCCGGTCGCCAGAAGAATGACAGTTGTTTTTCAGTCAAAGTTTCGAATAC 75805 ||| |||||||| || ||||||||||| || |||||||| || ||| | ||||| || Sbjct 925 ATCGACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTTTCTCGATCAGCTTCTCGAACAC 984 Query 75806 GCGATGTTTTTGTTCTTCATATCGGGCAAC 75835 ||| ||| |||| ||||| || || || Sbjct 985 CGGATATTTCTGTTGGTCATACCGCGCCAC 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568407635744640