Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq1434 179 2e-40 seq317 100 1e-16 >seq1434 Length=11778 Score = 179 bits (198), Expect = 2e-40 Identities = 356/524 (68%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 66324 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66383 ||||| |||||||||||||| ||||||||||| | || | || || |||||| Sbjct 11005 CAGCCTGACACTGGCGAGCAAGCCCTGGAGATTGCCGATATGCTGGTGCGCTCTGGCTCC 11064 Query 66384 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66443 || ||||| || |||||||| || || ||| || || || ||||| |||||||| Sbjct 11065 GTGGATATCGTGGTGGTTGACTCCGTTGCCGCCTTGACTCCACGTGCCGAAATCGAAGGC 11124 Query 66444 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 66503 || || || || || ||| | || |||| ||||| | ||||| || ||| ||||||| Sbjct 11125 GAAATGGGTGATAGCCACATGGGTTTGCAAGCGCGGTTGATGTCACAAGCCCTGCGCAAA 11184 Query 66504 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66563 || || || | |||| | ||||| || ||| | ||| | |||||| | || | Sbjct 11185 CTTACGGGTAACATCAAGCGTACCAATACCCTGGTGATCTTCATTAACCAGATCCGTATG 11244 Query 66564 AAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGG 66623 || |||||| | || | |||| || |||||||| ||||| || || ||| | Sbjct 11245 AAAATCGGCGTCATG---TTCGGCAATCCTGAAACCACCACAGGCGGTAACGCACTGAAG 11301 Query 66624 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 66683 || ||| |||| || ||| ||||| |||| |||| | | || || |||| |||||| Sbjct 11302 TTTTACTCCTCTGTACGCTTGGATATCCGCCGCACGGGCGCCATCAAAAAAGGTGATGAG 11361 Query 66684 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 66743 | | ||| ||| || || ||| |||| |||||| |||| || || | Sbjct 11362 GTGATTGGCTCTGAAACCAAAGTCAAAGTCATCAAAAACAAGGTGGCGCCACCCTTCAAA 11421 Query 66744 AATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTG-AGGTCGAACTCCTCGA 66802 | || |||||| | | ||||||| ||||||||||||||| |||| || | |||| Sbjct 11422 CAGGCTGAGTTCGACATAATGTACGGTGAGGGCATCTCGCGTTTAGGT-GAGGTGATCGA 11480 Query 66803 CCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 66846 |||| | | ||||| |||||||||||||||||| Sbjct 11481 ACTGGGCACCAACCTTAAACTGGTAGAGAAGTCGGGCGCCTGGT 11524 >seq317 Length=46315 Score = 100 bits (110), Expect = 1e-16 Identities = 189/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 66242 TGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66301 ||||| || ||||| |||||| | | ||| | | |||||||||||| | ||||| || Sbjct 31139 TGCCTTTATTGACGCGGAGCACGCGATTGACGCCCACTACGCCAAGGCGTTGGGTGTCGA 31080 Query 66302 CCTCGACAACCTCGTGGTGGTT--CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTT 66359 | | | | ||| | || | ||||| ||| |||| || | || |||||||||| | Sbjct 31079 CATTG--ATGCTCTTTATGTCTCGCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCT 31022 Query 66360 GACCTCCTCGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCTGTGGCGGCCC 66417 ||| || ||| ||| | |||| ||| | | ||||| | ||| ||| || |||| Sbjct 31021 GACACACTGATCAGGTC--GGGAGCAGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCC 30964 Query 66418 TGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGC 66477 | ||||| || || ||||| ||||| || || || ||| || | | ||||| || | Sbjct 30963 TCGTGCCCCGAGCAGAGCTGGAAGGGGAAATGGGAGACCAGCAAATTGCTCTGCAGGCAC 30904 Query 66478 GCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66511 |||| ||| || || |||||||||| || || Sbjct 30903 GCCTAATGAGTCAAGCTCTGCGCAAGCTGACTGG 30870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240932738613900