Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2805 168 2e-36 seq315 145 2e-29 seq497 125 2e-23 seq1314 123 6e-23 seq1466 114 3e-20 seq1601 111 4e-19 seq262 107 5e-18 seq204 105 2e-17 seq2933 102 2e-16 seq1711 96.9 8e-15 seq3583 91.5 4e-13 seq2252 91.5 4e-13 seq479 87.8 4e-12 seq380 84.2 5e-11 >seq2805 Length=4456 Score = 168 bits (186), Expect = 2e-36 Identities = 210/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| | ||| || ||||||| | || || | | Sbjct 3369 AACTTTATATTTAATTTTTAGTGCATTTGCGGGTGTTGTAGGTACAACTTTATCACTTTT 3428 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||||| || ||| |||||| || | || ||| || | || Sbjct 3429 AATTAGAATTGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATA 3488 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| || | || || ||||| || || ||| |||| ||||| |||||||| | | Sbjct 3489 TAATGTTGTTGTAACTGCTCATGCTTTAGTAATGGTTTTTTTTTTAGTTATGCCTGCATT 3548 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || || |||||||||||||| || |||||||||||||| Sbjct 3549 AATTGGAGGTTTTGGTAATTGGTTTGTACCTTTAATGATTGGCGCACCTGATATGGCTTT 3608 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 3609 TCCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCGGCTTTATT 3656 Score = 116 bits (128), Expect = 9e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||||||||| || |||||||||||||| | | ||||| ||||| ||||| Sbjct 4053 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACCGGATCACCTCCACCTGA 3994 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| |||||| ||||||||||||||||| |||| Sbjct 3993 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 3950 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | |||||| || ||||||||||| | || || | |||||| Sbjct 3875 AAAGGTAATCTATGAAAACTTAAACCTGGAGCTCTCATATTATAAATAGTTGAAATAAAA 3816 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | ||||| || |||| | |||||||||||| || |||| ||| Sbjct 3815 TTAATAGCTCCTAATAATGAAGAAATTCCTGTTAAATGTAAACTAAAAATAGCTAGATCT 3756 Query 371485 ACGGAA 371490 || ||| Sbjct 3755 ACTGAA 3750 >seq315 Length=59289 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || ||||| || |||| ||||| ||| || || | || ||| Sbjct 38584 AGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCT 38643 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| ||||| || || |||||||| Sbjct 38644 TCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 38703 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||||| || || | ||| || | |||||||| | |||||||||| Sbjct 38704 TGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTC 38763 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| || || | ||| | ||||| || Sbjct 38764 TTCCCTGTCAACGTCTTCACGAAAATCTGCATCTT 38798 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| || || || || || | || ||| Sbjct 38281 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCGTCT 38340 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| ||||| || || |||||||| Sbjct 38341 TCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 38400 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||||| || || | ||| || | |||||||| | |||||||||| Sbjct 38401 TGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTC 38460 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 38461 TTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38492 >seq497 Length=72191 Score = 125 bits (138), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 7510 GAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTTATT 7569 |||||||| || ||| ||| || || | || ||| || | || || ||| || Sbjct 71176 GAATTAGCACAACCTGGTAATCAGATTTTTATGGGAAATCATCATTTATATAATGTTGTT 71235 Query 7570 ATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGT 7629 | || || ||||| || || ||| |||| |||| |||||||| | | || || ||| Sbjct 71236 GTAACTGCTCATGCTTTAGTAATGGTTTT--TTTTAGTTATGCCCGCATTAATTGGAGGT 71293 Query 7630 TTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTT 7689 || || ||||| || || || ||||||||||| || |||||||||||||||||| | | Sbjct 71294 TTTGGTAATTGGTTTGTACCCTTAATGATTGGCGCACCTGATATGGCTTTTCCACGTATG 71353 Query 7690 AACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || |||||||||||||| ||| |||| || | ||||| Sbjct 71354 AATAATATAAGTTTTTGGTTATTACCTCCGGCTTTATT 71391 Score = 116 bits (128), Expect = 9e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||||||||| || |||||||||||||| | | ||||| ||||| ||||| Sbjct 71788 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACCGGATCACCTCCACCTGA 71729 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| |||||| ||||||||||||||||| |||| Sbjct 71728 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 71685 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | |||||| || ||||||||||| | || || | |||||| Sbjct 71610 AAAGGTAATCTATGAAAACTTAAACCTGGAGCTCTCATATTATAAATAGTTGAAATAAAA 71551 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | ||||| || |||| | |||||||||||| || |||| ||| Sbjct 71550 TTAATAGCTCCTAATAATGAAGAAATTCCTGTTAAATGTAAACTAAAAATAGCTAGATCT 71491 Query 371485 ACGGAA 371490 || ||| Sbjct 71490 ACTGAA 71485 >seq1314 Length=13110 Score = 123 bits (136), Expect = 6e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| || | | || | || ||||| || ||||| || || ||||| Sbjct 2069 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2128 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| |||||||| || || ||||| ||||||||| || Sbjct 2129 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2188 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| |||| || | |||||||| | ||||||||||||||| ||||| || || Sbjct 2189 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTT 2241 >seq1466 Length=17362 Score = 114 bits (126), Expect = 3e-20 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 11696 AGCCTCTTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 11755 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| |||||||||||||| | Sbjct 11756 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 11814 Query 6865 GTAAT 6869 | ||| Sbjct 11815 GCAAT 11819 Score = 111 bits (122), Expect = 4e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| |||||||||||||| || ||||| || || ||||| || || ||||||||| Sbjct 15086 AAAATTTGTCCATCAGTAATAGAAATTACATTAGTTGGAATATACGCTGATACATCACCT 15145 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || |||||| || |||| || |||||||||| ||| |||| Sbjct 15146 GCTTGAGTTTCTATAATAGGTAAAGCAGTTAAAGAACCACCACCAATTTTTCTATT 15201 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 12384 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 12325 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 12324 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 12265 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 12264 AACGCGTTAGCT 12253 >seq1601 Length=10388 Score = 111 bits (122), Expect = 4e-19 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || |||| ||||||| |||| ||||| || ||||||||||||| |||||||||| Sbjct 1397 ATGTCAAGGGCTGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 1338 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || ||||||||||||| |||||| |||| | | |||| ||| Sbjct 1337 TGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGA 1278 Query 7845 ATATTT-ACGCGTTAGCT 7861 || ||| | ||||||||| Sbjct 1277 ATGTTTAATGCGTTAGCT 1260 Score = 104 bits (114), Expect = 6e-17 Identities = 93/113 (82%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||||||||||||| | ||||||||| || ||| | ||||| Sbjct 722 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAA-CTCCTACGGGAGGCAG 780 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| ||||||| ||||||||||| |||| ||||| || ||| ||||| Sbjct 781 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGA 833 >seq262 Length=39563 Score = 107 bits (118), Expect = 5e-18 Identities = 87/104 (84%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||||||||| || |||||||||| ||| | | |||||| || || ||||| Sbjct 14943 TTCAGGATGACCAAAAAACCAAAATAAATGTTAATATAAAACAGGATCACCCCCACCTGA 14884 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| |||||| ||||||| ||||||||| |||| Sbjct 14883 TGGATCATAAAAAGAAGTATTTAAATTTCGATCAGTTAATAACA 14840 >seq204 Length=92628 Score = 105 bits (116), Expect = 2e-17 Identities = 89/106 (84%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTG--ATAAAGGATAGGATCGCCTCCGCCT 370729 |||||||||||||||||| || ||||||||||| |||||| ||||| ||||| ||| Sbjct 70180 TTCAGGATGACCAAAAAACCAAAATAAATGTTGGTATAAAG--CCGGATCACCTCCACCT 70237 Query 370730 GATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||||| |||| |||||| ||||||| ||||||||| |||| Sbjct 70238 GATGGATCATAAAAAGAAGTATTTAAATTTCGATCAGTTAATAACA 70283 >seq2933 Length=8488 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 1389 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 1330 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 1329 GTAACATGATGTATAGGGTCTGACAC 1304 >seq1711 Length=9496 Score = 96.9 bits (106), Expect = 8e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 1389 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 1330 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | | ||||||||||||||||| Sbjct 1329 GTAACATGTTGTATAGGGTCTGACAC 1304 >seq3583 Length=2760 Score = 91.5 bits (100), Expect = 4e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||| | |||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 1076 GGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGACCCC 1017 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851 || || || |||||||||| || |||||| ||||| | | ||||||| ||| ||| Sbjct 1016 CGCCAATTCCTTTGAGTTTCAATCTTGCGATCGTACTTCCCAGGTGGGATACTTA 962 >seq2252 Length=6434 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || || ||||| || ||||||||||||| ||||||||||| | | | Sbjct 4672 TGGTAAGGTTTTTCGCGTTGCGTCGAATTAAACCACATCCTCCACCGCTTGTGCGGGCCC 4731 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || || || |||| Sbjct 4732 CCGTCAATTCCTTTGAGTTTCACACTTGCGTGCGTACTCCCCAGGCGGGATGCTTAACGC 4791 Query 7855 GTTAGCT 7861 ||||||| Sbjct 4792 GTTAGCT 4798 >seq479 Length=33999 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || | || ||| | ||||| Sbjct 31148 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTACGACCATCC 31207 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||||||||| ||||||||||| || || || ||||| |||||||| ||| Sbjct 31208 TCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCT 31258 >seq380 Length=42667 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 || |||| ||| ||||| |||| |||||||||| ||||||| ||| ||| ||||| | Sbjct 10048 TAAGTGTCACAAAATAGGGGGTTGCGACTGTTTGATAAAAACTTAGGGCTCTGCTAAATG 9989 Query 372682 GTAAAACGATGTATAGGGTCTGAC 372705 |||| | ||||||||||||||||| Sbjct 9988 GTAACATGATGTATAGGGTCTGAC 9965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192389362202402