Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq69 132 4e-26 >seq69 Length=63067 Score = 132 bits (146), Expect = 4e-26 Identities = 562/874 (64%), Gaps = 14/874 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| ||||| || || || ||||| | | ||| || | ||||| | ||||| Sbjct 13383 ACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATCCAGTCAAAT 13324 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGC---TACAAGCAATCGGTCAGCT 4388 || || |||| | | || | || |||| |||| ||||| || ||||| ||| Sbjct 13323 GGGTTCTTTGCATGGAAAA-TCTTCGACACGCC-GAGCGAGTACAA-CAGGCGGTCCGCT 13267 Query 4389 ACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCA-CAGGTAG 4447 ||||| || || ||||||| |||||| | |||| || ||||| | |||| | || || Sbjct 13266 ACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAG-CTCAACGGGCAG 13208 Query 4448 CGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTT--ATT 4505 || || || |||||| || || || || || || || | || | ||| | | | Sbjct 13207 CGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTC-GCGAATG-ATCGTGTGGACG 13150 Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565 || | | | || || |||| | ||| | |||||||| || ||| Sbjct 13149 CGGTCCTCGGGCAGCTTGTTCACTAGCTTGGAGTACATGAGGCACGCAAAGTCCGTGTGC 13090 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 | || || |||| ||||| || ||||| || || | | || ||||| | ||| | | Sbjct 13089 ATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGC 13030 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 || || |||||||| || | | || || || || ||||| |||||||| || | |||| Sbjct 13029 TTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCA 12970 Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTT-TGTCTTTAATCCATTTTAATGCCCA 4744 || || | | || | || |||| ||| || | | ||| || | ||||| Sbjct 12969 AATGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGGGTCGCA-CCACTTGAGCGCCCA 12911 Query 4745 GTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTC 4804 || ||||| || ||| ||||| || || | || ||| | | | | || || Sbjct 12910 ATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTC 12851 Query 4805 AAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTC 4864 | |||| ||| || ||||| || || || ||| | ||| || || || ||||| Sbjct 12850 CGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTC 12791 Query 4865 TATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924 || || ||||| || || |||||||| | |||||| | ||||| ||||| || | ||| Sbjct 12790 AATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAA 12731 Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 | | | || ||||| || || || |||||||||||||| || || | ||||| Sbjct 12730 GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATG 12671 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 ||||||| | || | | | || || ||||| | ||| | || Sbjct 12670 CTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCAA 12611 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 || | || ||| ||||||| ||||| |||||||| || |||||||| ||| | || Sbjct 12610 GTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACACGTC 12551 Query 5105 AGGATACTGAATCGGAAGTATGACAAATCTGTTG 5138 | | || ||||||| | ||||| | |||| Sbjct 12550 GTGCTCTTGGATCGGAAAGAGCACAAAGCGGTTG 12517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427001285076239