Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq69 132 4e-26
>seq69
Length=63067
Score = 132 bits (146), Expect = 4e-26
Identities = 562/874 (64%), Gaps = 14/874 (2%)
Strand=Plus/Minus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|| ||||| ||||| || || || ||||| | | ||| || | ||||| | |||||
Sbjct 13383 ACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATCCAGTCAAAT 13324
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGC---TACAAGCAATCGGTCAGCT 4388
|| || |||| | | || | || |||| |||| ||||| || ||||| |||
Sbjct 13323 GGGTTCTTTGCATGGAAAA-TCTTCGACACGCC-GAGCGAGTACAA-CAGGCGGTCCGCT 13267
Query 4389 ACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCA-CAGGTAG 4447
||||| || || ||||||| |||||| | |||| || ||||| | |||| | || ||
Sbjct 13266 ACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAG-CTCAACGGGCAG 13208
Query 4448 CGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTT--ATT 4505
|| || || |||||| || || || || || || || | || | ||| | | |
Sbjct 13207 CGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTC-GCGAATG-ATCGTGTGGACG 13150
Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565
|| | | | || || |||| | ||| | |||||||| || |||
Sbjct 13149 CGGTCCTCGGGCAGCTTGTTCACTAGCTTGGAGTACATGAGGCACGCAAAGTCCGTGTGC 13090
Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625
| || || |||| ||||| || ||||| || || | | || ||||| | ||| | |
Sbjct 13089 ATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGC 13030
Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685
|| || |||||||| || | | || || || || ||||| |||||||| || | ||||
Sbjct 13029 TTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCA 12970
Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTT-TGTCTTTAATCCATTTTAATGCCCA 4744
|| || | | || | || |||| ||| || | | ||| || | |||||
Sbjct 12969 AATGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGGGTCGCA-CCACTTGAGCGCCCA 12911
Query 4745 GTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTC 4804
|| ||||| || ||| ||||| || || | || ||| | | | | || ||
Sbjct 12910 ATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTC 12851
Query 4805 AAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTC 4864
| |||| ||| || ||||| || || || ||| | ||| || || || |||||
Sbjct 12850 CGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTC 12791
Query 4865 TATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924
|| || ||||| || || |||||||| | |||||| | ||||| ||||| || | |||
Sbjct 12790 AATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAA 12731
Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984
| | | || ||||| || || || |||||||||||||| || || | |||||
Sbjct 12730 GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATG 12671
Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044
||||||| | || | | | || || ||||| | ||| | ||
Sbjct 12670 CTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCAA 12611
Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104
|| | || ||| ||||||| ||||| |||||||| || |||||||| ||| | ||
Sbjct 12610 GTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACACGTC 12551
Query 5105 AGGATACTGAATCGGAAGTATGACAAATCTGTTG 5138
| | || ||||||| | ||||| | ||||
Sbjct 12550 GTGCTCTTGGATCGGAAAGAGCACAAAGCGGTTG 12517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427001285076239
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |