Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq478 174 1e-38 >seq478 Length=29740 Score = 174 bits (192), Expect = 1e-38 Identities = 400/592 (68%), Gaps = 14/592 (2%) Strand=Plus/Minus Query 27142 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 27201 |||||||||||||| | ||| || || || ||||| || | | || | |||||| || Sbjct 15630 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 15571 Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261 |||| | || | || || |||| | | ||| || || | |||||||||||| || Sbjct 15570 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 15511 Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA 27321 || || || |||||||||||||| | || | |||||| | ||| ||||| | ||| || Sbjct 15510 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 15451 Query 27322 TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 || ||||||||||||||| | ||||||||| || || |||||| | || Sbjct 15450 TCAGCTACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATCA 15391 Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGG 27438 || |||||||| ||| | ||| || | || ||||| ||| || || | Sbjct 15390 GCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTTGTGT 15331 Query 27439 TCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGT 27497 ||| | || ||||| ||||| || || | ||||| | |||||| || Sbjct 15330 ATCAC----CTCAGCGAGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATGCATGTCGGT 15275 Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 ||||| ||| |||||||| | ||| ||||| || || || ||||| |||||||| | || Sbjct 15274 GTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCCTACCTC 15215 Query 27558 CCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 || ||| || ||||| || |||||| | || | || || ||| |||||||||| Sbjct 15214 CC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGATAC 15156 Query 27617 TTACCCCCTTCTCGGAGAGC-TCTTTGGAGT-TTGTGGACCCTCTGACGAACCACAGCAG 27674 || || || | ||| | | || | | ||| ||||| | | |||||||||||| Sbjct 15155 GGACACCTTTTTGCTGTAGCGTGTGTGCACTCGTGT-CACCCT-TAATGAACCACAGCAG 15098 Query 27675 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726 |||||| | || | ||| || || | ||| ||||| || | |||||| Sbjct 15097 CTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAAC 15046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369465395225573