Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq478 174 1e-38
>seq478
Length=29740
Score = 174 bits (192), Expect = 1e-38
Identities = 400/592 (68%), Gaps = 14/592 (2%)
Strand=Plus/Minus
Query 27142 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 27201
|||||||||||||| | ||| || || || ||||| || | | || | |||||| ||
Sbjct 15630 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 15571
Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261
|||| | || | || || |||| | | ||| || || | |||||||||||| ||
Sbjct 15570 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 15511
Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA 27321
|| || || |||||||||||||| | || | |||||| | ||| ||||| | ||| ||
Sbjct 15510 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 15451
Query 27322 TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381
|| ||||||||||||||| | ||||||||| || || |||||| | ||
Sbjct 15450 TCAGCTACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATCA 15391
Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGG 27438
|| |||||||| ||| | ||| || | || ||||| ||| || || |
Sbjct 15390 GCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTTGTGT 15331
Query 27439 TCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGT 27497
||| | || ||||| ||||| || || | ||||| | |||||| ||
Sbjct 15330 ATCAC----CTCAGCGAGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATGCATGTCGGT 15275
Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557
||||| ||| |||||||| | ||| ||||| || || || ||||| |||||||| | ||
Sbjct 15274 GTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCCTACCTC 15215
Query 27558 CCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616
|| ||| || ||||| || |||||| | || | || || ||| ||||||||||
Sbjct 15214 CC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGATAC 15156
Query 27617 TTACCCCCTTCTCGGAGAGC-TCTTTGGAGT-TTGTGGACCCTCTGACGAACCACAGCAG 27674
|| || || | ||| | | || | | ||| ||||| | | ||||||||||||
Sbjct 15155 GGACACCTTTTTGCTGTAGCGTGTGTGCACTCGTGT-CACCCT-TAATGAACCACAGCAG 15098
Query 27675 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726
|||||| | || | ||| || || | ||| ||||| || | ||||||
Sbjct 15097 CTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAAC 15046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369465395225573
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |