Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5172 123 3e-23 seq179 96.9 5e-15 seq8027 89.7 7e-13 >seq5172 Length=1594 Score = 123 bits (136), Expect = 3e-23 Identities = 421/648 (65%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 47840 AACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA 47899 ||| ||| ||||||||| ||| |||||||| || || ||||| |||||||||| || Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011 Query 47900 TGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAA 47959 ||| || ||||||||| ||||| ||||| || | ||| ||||| || | Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071 Query 47960 T-TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCA 48018 | || | | ||| | || ||||| || || || || |||||||| ||| |||| Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130 Query 48019 TTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCAT 48078 | || || || || || | || || || | ||| || ||||| || | || || | Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190 Query 48079 CCACTATTATCG-ATGTTACCGTTTCCTCACTTGGTGG---ATACAACAAATGTTTAAAC 48134 | | || ||| | | |||| || || | || || | || | || Sbjct 1191 CGGCAATAATCTCACGCAGGCGTT----CAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246 Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 | || || || || ||| ||| | |||||||| | | || | ||| || ||||| Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGA 48253 | | || ||||| || ||||| ||||| ||||| || || | || ||| | ||||| Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGA-GCAGAAGCTACCAGA 1365 Query 48254 AAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT 48313 |||||| |||||||| | ||| ||||| ||| ||| | ||| | | ||| || || Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAAGCTGCCT---TT 1422 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 | ||||| || | ||||| ||||| || | || ||||||| ||||| || || Sbjct 1423 TTCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGC 1482 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 || || ||||||||| | | || || |||||||| | | ||| || Sbjct 1483 GCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTA 1542 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 |||| || || || || || || |||||||| ||||||||||| Sbjct 1543 GGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 >seq179 Length=46302 Score = 96.9 bits (106), Expect = 5e-15 Identities = 748/1190 (63%), Gaps = 22/1190 (2%) Strand=Plus/Plus Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACG 77478 |||| || || || ||||| || |||||||| || || | |||| || ||||||| Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237 Query 77479 GATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 || | | |||||||| ||||| || | ||||| || ||||| || | || | | Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | | | | ||||| | |||||||| || || || ||||| | || || | || | Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357 Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT 77658 | || || | || || | |||||| | || || ||| ||| || | Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417 Query 77659 CTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG-CG 77717 || ||||||| || || |||| || || | |||||| || || || |||| | || Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477 Query 77718 TTGGCATATTGTATTA--TCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 | | | | || | || | | ||| || ||||| | ||| ||||| || || | Sbjct 21478 ACGTGA-ACTCCATCACTTCACAGCACA-AG-TTACTGGACCGGATCGTGCCAAGGTTCT 21534 Query 77776 GTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATAAACGG-AGTCCCGGTTTC 77833 | ||||| | ||| | || || |||||||| || ||||| || | ||||| |||| Sbjct 21535 GCTGGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCG-TTTC 21592 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATCATAGATTTGTATC 77892 |||||| | || | || | ||| | | || | | || ||| | || | | Sbjct 21593 AATCTGCGCATCCAAGATCGCAAACCACA-GCTGCTGGGCATTGATCGTC--TTCCTCGC 21649 Query 77893 GCCTCTCTCTT--TCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCA 77948 | || ||||| || || || || | || | ||||| || || ||||| || Sbjct 21650 CCGTCCCTCTTGTTCGTACTTTTCATACAAAGTC--TCAAACTCGTCGCCCCAGTACTCG 21707 Query 77949 TCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGT 78008 | || || || ||||||||| || | ||| ||| | ||||| | | | || ||| Sbjct 21708 TACAGCCCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGT 21767 Query 78009 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCA 78068 ||||| || ||||| |||| ||| | |||| || | || || | | ||| |||| Sbjct 21768 TTCATGAATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCA 21827 Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || || ||| || | |||||||||||| | | || | ||||| ||||| | Sbjct 21828 TTGCCATGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAG 21887 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 || || || | ||| ||||| || || ||||| | |||| || |||| | Sbjct 21888 TAGATCGCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCA 21947 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 ||| | || | | ||| || ||||| ||||| || | ||||| || || || || Sbjct 21948 TTAAACACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAG 22007 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATT 78308 || | || || ||||| || || || || ||||||||| || || || Sbjct 22008 CTATTCGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATG 22067 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAG 78367 || || ||||||| ||||| ||||| || || || ||||| |||| | || Sbjct 22068 CACGCACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAAT 22127 Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427 || ||| || ||||| ||| | || || || |||||||| | ||||| | || Sbjct 22128 AA-AAAGCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGC 22186 Query 78428 ATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCA 78487 ||| ||||| | || | || | || | |||||||| | || | |||||| Sbjct 22187 ATGGGTAAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTG 22246 Query 78488 TTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATT 78547 || ||| || || | ||| || || | | ||| || || || | ||| || ||| Sbjct 22247 TTTATGGATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACC 22306 Query 78548 ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGT 78597 || | ||||| || | ||| | |||||||| |||||||||| Sbjct 22307 GTTGACCCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGT 22356 >seq8027 Length=1067 Score = 89.7 bits (98), Expect = 7e-13 Identities = 299/465 (64%), Gaps = 3/465 (1%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 ||||||| |||| || ||| | |||||| || || |||||||| || ||||| || Sbjct 492 GTAAACTTGATTGCGTCAGCTGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGG 433 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 || |||| || || ||||||||| ||||| ||||| || || || | ||| Sbjct 432 CCTTTTTTCCAGCCATAAAAATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATA 373 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 | ||| | |||||| ||| ||| || || || | ||||| ||||| | || Sbjct 372 AACAGATTTAAGGACTGAGACTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATC 313 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021 | || || |||||||| | |||||| | | || ||||| | || |||| Sbjct 312 AGGGCACGCTGCTTGATTTCCCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATC 253 Query 77022 TTTGTATTT---TGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078 | | | | ||||| || ||| | | |||||| |||| || | |||||||| Sbjct 252 TCAGGAATCGCCTGAATTGATCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTC 193 Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138 |||| | ||| ||| | | || ||||| ||||| | ||| || || Sbjct 192 CACAGACCCAGCTCAACTAAGTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCG 133 Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198 ||||| || | || || || | ||| ||||| || || | | | || || || || Sbjct 132 GACAAGACGCGGCGGGTATAGAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCG 73 Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 | ||| |||| || |||||||| ||||| || || || |||||| Sbjct 72 AGAATCTGAGAGGTTGAAGCAGTCGGCATGGGCGCAACTAATAAA 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694588192369120