Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq69 161 1e-34
seq5172 132 7e-26
seq179 118 2e-21
seq8027 102 1e-16
>seq69
Length=63067
Score = 161 bits (178), Expect = 1e-34
Identities = 416/623 (67%), Gaps = 23/623 (4%)
Strand=Plus/Minus
Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681
|||| | || ||||| || || | ||| ||||||| |||||| | ||||| || |
Sbjct 13115 ACATGAGGCACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGA 13056
Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741
| |||| |||||||| || || ||||| || |||||||| || | ||| || || |
Sbjct 13055 AGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCG 12996
Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801
| ||||| |||||||| || | || ||||| | || | ||| |||| | || |
Sbjct 12995 AGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAG-ATACT 12937
Query 46802 TATGAATC-CACCT-TTGAGC--CCAATCAGCCTTTTTCTTT---ACACAAGGCATTGTT 46854
| || || |||| |||||| ||||| || ||||||| ||||| || || ||
Sbjct 12936 TGTGGGTCGCACCACTTGAGCGCCCAATTGGC---TTTCTTTCGAACACACGGGATGGTC 12880
Query 46855 TCTATAGCATTAAAGAGAAAGtt----tttttCATCACTATCTTTAACATATGTATCTAT 46910
|| || || | ||| || || | | || | ||||||| || || || ||
Sbjct 12879 TCAATCGCGCGCA---GAAGGTGATCCTTCTCCGTCGCC-TCTTTAATGTACGTGTCAAT 12824
Query 46911 TAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970
| || ||| | ||| || || ||||||||||| || ||||| || || ||||| ||
Sbjct 12823 GAGCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCA 12764
Query 46971 TCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA--GACAAATTCTCATTCACT 47028
| ||||| | | || || || | | ||| ||||| | || |||||| |||||
Sbjct 12763 CCGAGCTTCCGGCACTTGCACTTCATTGCTAAA--GTTCATGGCCAGATTCTCGTTCACA 12706
Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTA 47088
|| |||||||| || ||||| || || | ||||| || ||||| | |||| |
Sbjct 12705 ATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCC 12646
Query 47089 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148
|| || || |||||| |||| ||| | | |||| || ||||| ||||||||
Sbjct 12645 GTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAAC 12586
Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACA 47208
|| || || || || || ||||| | ||| | || | | |||||||||||| | |||
Sbjct 12585 GAAGCTTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACA 12526
Query 47209 AATCTATTTGGATTTTTTGCAAG 47231
|| | || || || || ||||
Sbjct 12525 AAGCGGTTGGGGTTCTTCACAAG 12503
>seq5172
Length=1594
Score = 132 bits (146), Expect = 7e-26
Identities = 423/648 (65%), Gaps = 15/648 (2%)
Strand=Plus/Plus
Query 46329 AACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA 46388
||| ||| |||||| || ||| |||||||| || || ||||| |||||||||| ||
Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011
Query 46389 TGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAA 46448
||| || ||||||||| ||||| ||||| | | | ||| ||||| || |
Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071
Query 46449 T-TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCA 46507
| || | | ||| | || ||||| || || || ||| |||||||| ||| ||||
Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130
Query 46508 TTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCAT 46567
| || || || || || | || || || | ||| || |||||||| | || || |
Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190
Query 46568 CCGATATTATCG-ATGTTACTGTTTCCTCACTTGGTGGATGCATCAAA---TGTTTAAAC 46623
| | || ||| | | ||| || || | | | ||| || | ||
Sbjct 1191 CGGCAATAATCTCACGCAGGCGTT----CAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246
Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683
| || || || || ||| ||| | ||||||||| | | || | ||| || |||||
Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306
Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGA 46742
| | || ||||| || ||||||||||| ||||| || || | || ||| | |||||
Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAAT-GGAGCAGAAGCTACCAGA 1365
Query 46743 AAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT 46802
|||||| |||||||| | || || || |||||||| | ||| | | ||| | ||
Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAAGCTG---CCTTT 1422
Query 46803 ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862
| ||||| | ||||||| ||||| || | || ||||||| ||||| || ||
Sbjct 1423 TTCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGC 1482
Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922
|| || ||||||||| | || || ||| ||||| | | ||| ||
Sbjct 1483 GCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTA 1542
Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970
|||| ||||| ||||| || || |||||||| |||||||||||
Sbjct 1543 GGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590
Score = 84.2 bits (92), Expect = 3e-11
Identities = 130/183 (71%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457
|||||||| || || | || || ||| ||||| || ||||| || |||||| | || |
Sbjct 475 GCATAGTCGGGGTGACGGGTGGT-CAGAGTGGCGGCAATTTCAGCTGCTAAATTGTCGAG 533
Query 77458 TTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGG 77517
||| || ||||| || |||| ||| || |||| |||||||||||||| | | | | |||
Sbjct 534 TTCAATGGTAGTGACGCCGTCATAGAGGCCTTCGATAACTTTCATGGCGACTCTAACAGG 593
Query 77518 ATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGAGATGTGATTTTATC 77577
|| ||| | || | ||||||||| | ||| ||| || || || ||||| ||
Sbjct 594 GTCAACATGATTTTGGTCGAGACCATAACAGAGTTTCTGAATGCGGGAGGTAATTTTGTC 653
Query 77578 AAA 77580
||
Sbjct 654 GAA 656
>seq179
Length=46302
Score = 118 bits (130), Expect = 2e-21
Identities = 777/1239 (63%), Gaps = 12/1239 (1%)
Strand=Plus/Plus
Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAG 76073
|||| || || || ||||| || |||||||| || || |||||| || ||||| |
Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237
Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133
|| | | |||||||| ||||| || || ||||| || ||||| || | || | |
Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297
Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193
| | | | ||||| | |||||||| || ||||| ||||| | || || | || |
Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357
Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253
| || || | || || | |||||| | || || ||| ||| || |
Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417
Query 76254 CTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCAT 76313
|| |||||| | || |||| || || | |||||| || || || |||| |
Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477
Query 76314 TGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTT 76373
| | | || | || ||| | ||||| || ||| || ||||| || || |
Sbjct 21478 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21537
Query 76374 GGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432
|||| | ||| | | || || |||||||| || | ||| || ||| |||||||||
Sbjct 21538 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21596
Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATTATAGATTTGTATCGCTT 76491
|| | || | || | ||| | | || | | || || | || | | | |
Sbjct 21597 TGCGCATCCAAGATCGCAAACCACA-GCTGCTGGGCATTGATCGTC--TTCCTCGCCCGT 21653
Query 76492 CTCTCTT--TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549
| ||||| || || | | ||| || ||||| || || ||||| || | ||
Sbjct 21654 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21713
Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609
|| ||| |||||| ||||| | ||| ||||| ||||| | | | |||||||||||
Sbjct 21714 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21773
Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669
|| ||||| |||| ||| | |||| || | || || | | | | |||||| ||
Sbjct 21774 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21833
Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729
||| || | ||| || ||||| | | || | ||||| ||||| | || |||
Sbjct 21834 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21893
Query 76730 GCCATAACACCCGGT-CGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788
| || | | || | ||||| || || ||||| | |||| || |||| |||| |
Sbjct 21894 G-CAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21952
Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848
|| | | ||| || ||||| ||||| || | ||||| || || || || ||
Sbjct 21953 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATT 22012
Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908
|| || ||||| ||| | ||| || ||||||||| ||| || || ||
Sbjct 22013 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 22072
Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAA 76967
||| ||||||| || |||||||| || || || |||||| |||| | || || ||
Sbjct 22073 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAA-AA 22131
Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027
| || ||||| ||| | || || || |||||||||| || || | ||||| |
Sbjct 22132 AGCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGG 22191
Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087
| || | || | || | || | |||||||| | | || || ||| || ||
Sbjct 22192 TAAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTAT 22251
Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147
| || || | ||||| || | | ||| || || || ||||| || ||| || |
Sbjct 22252 GGATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGA 22311
Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207
||||| || | ||| | |||||||| |||||||||| ||| || || |
Sbjct 22312 CCCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCC 22371
Query 77208 TTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATT 77246
|||| || || | ||||| | |||||||| ||
Sbjct 22372 GGTCGTGGATGATCGCGGAATTCAAGAGGTCCTTATGTT 22410
>seq8027
Length=1067
Score = 102 bits (112), Expect = 1e-16
Identities = 290/445 (65%), Gaps = 3/445 (1%)
Strand=Plus/Minus
Query 75397 TGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 75456
||| | |||||| || || |||||||| || ||||| || || |||| || || ||
Sbjct 472 TGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAA 413
Query 75457 ATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACT 75516
||||||| || || ||||| || || || | ||| | ||| | ||||||
Sbjct 412 ATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGA 353
Query 75517 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 75576
||| ||| || || || | ||||| ||||| | || | || || |||||
Sbjct 352 CTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTC 293
Query 75577 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTGTATTT---TGAATGGA 75633
||| | |||||| | | || ||||| | || |||| | | | | ||||| ||
Sbjct 292 CCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGA 233
Query 75634 TCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693
||| ||| |||||| |||| |||| | |||||||||||| ||| |||
Sbjct 232 TCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAA 173
Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753
| | || ||||| ||||||| ||| || || ||||| || | || || ||
Sbjct 172 GTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATA 113
Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813
| ||| ||||| || || | | | || || || || | ||| |||| ||||||||
Sbjct 112 GAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGC 53
Query 75814 AGTCGGCATAGGTGCCACCAATAAA 75838
||||||||| || || || ||||||
Sbjct 52 AGTCGGCATGGGCGCAACTAATAAA 28
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712851672874560
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