Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq69 161 1e-34 seq5172 132 7e-26 seq179 118 2e-21 seq8027 102 1e-16 >seq69 Length=63067 Score = 161 bits (178), Expect = 1e-34 Identities = 416/623 (67%), Gaps = 23/623 (4%) Strand=Plus/Minus Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | || ||||| || || | ||| ||||||| |||||| | ||||| || | Sbjct 13115 ACATGAGGCACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGA 13056 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | |||| |||||||| || || ||||| || |||||||| || | ||| || || | Sbjct 13055 AGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCG 12996 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801 | ||||| |||||||| || | || ||||| | || | ||| |||| | || | Sbjct 12995 AGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAG-ATACT 12937 Query 46802 TATGAATC-CACCT-TTGAGC--CCAATCAGCCTTTTTCTTT---ACACAAGGCATTGTT 46854 | || || |||| |||||| ||||| || ||||||| ||||| || || || Sbjct 12936 TGTGGGTCGCACCACTTGAGCGCCCAATTGGC---TTTCTTTCGAACACACGGGATGGTC 12880 Query 46855 TCTATAGCATTAAAGAGAAAGtt----tttttCATCACTATCTTTAACATATGTATCTAT 46910 || || || | ||| || || | | || | ||||||| || || || || Sbjct 12879 TCAATCGCGCGCA---GAAGGTGATCCTTCTCCGTCGCC-TCTTTAATGTACGTGTCAAT 12824 Query 46911 TAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970 | || ||| | ||| || || ||||||||||| || ||||| || || ||||| || Sbjct 12823 GAGCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCA 12764 Query 46971 TCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA--GACAAATTCTCATTCACT 47028 | ||||| | | || || || | | ||| ||||| | || |||||| ||||| Sbjct 12763 CCGAGCTTCCGGCACTTGCACTTCATTGCTAAA--GTTCATGGCCAGATTCTCGTTCACA 12706 Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTA 47088 || |||||||| || ||||| || || | ||||| || ||||| | |||| | Sbjct 12705 ATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCC 12646 Query 47089 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 || || || |||||| |||| ||| | | |||| || ||||| |||||||| Sbjct 12645 GTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAAC 12586 Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACA 47208 || || || || || || ||||| | ||| | || | | |||||||||||| | ||| Sbjct 12585 GAAGCTTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACA 12526 Query 47209 AATCTATTTGGATTTTTTGCAAG 47231 || | || || || || |||| Sbjct 12525 AAGCGGTTGGGGTTCTTCACAAG 12503 >seq5172 Length=1594 Score = 132 bits (146), Expect = 7e-26 Identities = 423/648 (65%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 46329 AACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA 46388 ||| ||| |||||| || ||| |||||||| || || ||||| |||||||||| || Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011 Query 46389 TGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAA 46448 ||| || ||||||||| ||||| ||||| | | | ||| ||||| || | Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071 Query 46449 T-TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCA 46507 | || | | ||| | || ||||| || || || ||| |||||||| ||| |||| Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130 Query 46508 TTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCAT 46567 | || || || || || | || || || | ||| || |||||||| | || || | Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190 Query 46568 CCGATATTATCG-ATGTTACTGTTTCCTCACTTGGTGGATGCATCAAA---TGTTTAAAC 46623 | | || ||| | | ||| || || | | | ||| || | || Sbjct 1191 CGGCAATAATCTCACGCAGGCGTT----CAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246 Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 | || || || || ||| ||| | ||||||||| | | || | ||| || ||||| Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGA 46742 | | || ||||| || ||||||||||| ||||| || || | || ||| | ||||| Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAAT-GGAGCAGAAGCTACCAGA 1365 Query 46743 AAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT 46802 |||||| |||||||| | || || || |||||||| | ||| | | ||| | || Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAAGCTG---CCTTT 1422 Query 46803 ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | ||||| | ||||||| ||||| || | || ||||||| ||||| || || Sbjct 1423 TTCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGC 1482 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 || || ||||||||| | || || ||| ||||| | | ||| || Sbjct 1483 GCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTA 1542 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970 |||| ||||| ||||| || || |||||||| ||||||||||| Sbjct 1543 GGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457 |||||||| || || | || || ||| ||||| || ||||| || |||||| | || | Sbjct 475 GCATAGTCGGGGTGACGGGTGGT-CAGAGTGGCGGCAATTTCAGCTGCTAAATTGTCGAG 533 Query 77458 TTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGG 77517 ||| || ||||| || |||| ||| || |||| |||||||||||||| | | | | ||| Sbjct 534 TTCAATGGTAGTGACGCCGTCATAGAGGCCTTCGATAACTTTCATGGCGACTCTAACAGG 593 Query 77518 ATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGAGATGTGATTTTATC 77577 || ||| | || | ||||||||| | ||| ||| || || || ||||| || Sbjct 594 GTCAACATGATTTTGGTCGAGACCATAACAGAGTTTCTGAATGCGGGAGGTAATTTTGTC 653 Query 77578 AAA 77580 || Sbjct 654 GAA 656 >seq179 Length=46302 Score = 118 bits (130), Expect = 2e-21 Identities = 777/1239 (63%), Gaps = 12/1239 (1%) Strand=Plus/Plus Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAG 76073 |||| || || || ||||| || |||||||| || || |||||| || ||||| | Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237 Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 || | | |||||||| ||||| || || ||||| || ||||| || | || | | Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | | | | ||||| | |||||||| || ||||| ||||| | || || | || | Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253 | || || | || || | |||||| | || || ||| ||| || | Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417 Query 76254 CTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCAT 76313 || |||||| | || |||| || || | |||||| || || || |||| | Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477 Query 76314 TGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTT 76373 | | | || | || ||| | ||||| || ||| || ||||| || || | Sbjct 21478 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21537 Query 76374 GGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 |||| | ||| | | || || |||||||| || | ||| || ||| ||||||||| Sbjct 21538 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21596 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATTATAGATTTGTATCGCTT 76491 || | || | || | ||| | | || | | || || | || | | | | Sbjct 21597 TGCGCATCCAAGATCGCAAACCACA-GCTGCTGGGCATTGATCGTC--TTCCTCGCCCGT 21653 Query 76492 CTCTCTT--TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 | ||||| || || | | ||| || ||||| || || ||||| || | || Sbjct 21654 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21713 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||| |||||| ||||| | ||| ||||| ||||| | | | ||||||||||| Sbjct 21714 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21773 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || ||||| |||| ||| | |||| || | || || | | | | |||||| || Sbjct 21774 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21833 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 ||| || | ||| || ||||| | | || | ||||| ||||| | || ||| Sbjct 21834 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21893 Query 76730 GCCATAACACCCGGT-CGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788 | || | | || | ||||| || || ||||| | |||| || |||| |||| | Sbjct 21894 G-CAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21952 Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848 || | | ||| || ||||| ||||| || | ||||| || || || || || Sbjct 21953 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATT 22012 Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 || || ||||| ||| | ||| || ||||||||| ||| || || || Sbjct 22013 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 22072 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAA 76967 ||| ||||||| || |||||||| || || || |||||| |||| | || || || Sbjct 22073 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAA-AA 22131 Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 | || ||||| ||| | || || || |||||||||| || || | ||||| | Sbjct 22132 AGCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGG 22191 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 | || | || | || | || | |||||||| | | || || ||| || || Sbjct 22192 TAAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTAT 22251 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | || || | ||||| || | | ||| || || || ||||| || ||| || | Sbjct 22252 GGATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGA 22311 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 ||||| || | ||| | |||||||| |||||||||| ||| || || | Sbjct 22312 CCCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCC 22371 Query 77208 TTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATT 77246 |||| || || | ||||| | |||||||| || Sbjct 22372 GGTCGTGGATGATCGCGGAATTCAAGAGGTCCTTATGTT 22410 >seq8027 Length=1067 Score = 102 bits (112), Expect = 1e-16 Identities = 290/445 (65%), Gaps = 3/445 (1%) Strand=Plus/Minus Query 75397 TGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 75456 ||| | |||||| || || |||||||| || ||||| || || |||| || || || Sbjct 472 TGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAA 413 Query 75457 ATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACT 75516 ||||||| || || ||||| || || || | ||| | ||| | |||||| Sbjct 412 ATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGA 353 Query 75517 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 75576 ||| ||| || || || | ||||| ||||| | || | || || ||||| Sbjct 352 CTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTC 293 Query 75577 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTGTATTT---TGAATGGA 75633 ||| | |||||| | | || ||||| | || |||| | | | | ||||| || Sbjct 292 CCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGA 233 Query 75634 TCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 ||| ||| |||||| |||| |||| | |||||||||||| ||| ||| Sbjct 232 TCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAA 173 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | | || ||||| ||||||| ||| || || ||||| || | || || || Sbjct 172 GTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATA 113 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 | ||| ||||| || || | | | || || || || | ||| |||| |||||||| Sbjct 112 GAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGC 53 Query 75814 AGTCGGCATAGGTGCCACCAATAAA 75838 ||||||||| || || || |||||| Sbjct 52 AGTCGGCATGGGCGCAACTAATAAA 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712851672874560