Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_031078.1
Length=50082
Score E
Sequences producing significant alignments: (Bits) Value
seq5998 147 7e-31
>seq5998
Length=1361
Score = 147 bits (162), Expect = 7e-31
Identities = 186/253 (74%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 40167 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40226
||||||||||||| |||||||||||||||||| || ||||||||||| ||||| || |
Sbjct 711 AAGTCGATGTCAAAGTCGGGCATGGACACGCGTTCCGGGTTCAGGAAGCGCTCAAACAGC 770
Query 40227 AGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCG 40286
| || | || || || || || || ||||| | || |||||| |||| || ||
Sbjct 771 AAGTTGTACTTGAGTGGATCAAGATCGGTAATGCCCAAGCTGTAGGCAACCAATGAGCCA 830
Query 40287 GCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAG 40346
||| | || || || || || || ||| |||||| || | |||||||||| ||| |||
Sbjct 831 GCACCAGATCCGCGCCCCGGCCCTACCGGCACGCCATTGTTCTTGGCCCAGTTGATAAAG 890
Query 40347 TCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTAC 40406
|| || |||| ||| |||||| || || |||| ||| || || ||| || ||| |
Sbjct 891 TCTGCCACGATCAGAAAGTAGCCGGGAAAGCCCATCTGAATAATGATGCCGCACTCAAAT 950
Query 40407 TG-AAGC-TGCTT 40417
|| |||| |||||
Sbjct 951 TGTAAGCGTGCTT 963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160123146778824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |