Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq5998 147 7e-31 >seq5998 Length=1361 Score = 147 bits (162), Expect = 7e-31 Identities = 186/253 (74%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 40167 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40226 ||||||||||||| |||||||||||||||||| || ||||||||||| ||||| || | Sbjct 711 AAGTCGATGTCAAAGTCGGGCATGGACACGCGTTCCGGGTTCAGGAAGCGCTCAAACAGC 770 Query 40227 AGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCG 40286 | || | || || || || || || ||||| | || |||||| |||| || || Sbjct 771 AAGTTGTACTTGAGTGGATCAAGATCGGTAATGCCCAAGCTGTAGGCAACCAATGAGCCA 830 Query 40287 GCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAG 40346 ||| | || || || || || || ||| |||||| || | |||||||||| ||| ||| Sbjct 831 GCACCAGATCCGCGCCCCGGCCCTACCGGCACGCCATTGTTCTTGGCCCAGTTGATAAAG 890 Query 40347 TCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTAC 40406 || || |||| ||| |||||| || || |||| ||| || || ||| || ||| | Sbjct 891 TCTGCCACGATCAGAAAGTAGCCGGGAAAGCCCATCTGAATAATGATGCCGCACTCAAAT 950 Query 40407 TG-AAGC-TGCTT 40417 || |||| ||||| Sbjct 951 TGTAAGCGTGCTT 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160123146778824