Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq2003 150 2e-31 >seq2003 Length=7520 Score = 150 bits (166), Expect = 2e-31 Identities = 327/487 (67%), Gaps = 2/487 (0%) Strand=Plus/Minus Query 141206 AAACAGAGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATCTGAAC 141265 |||||||||||||| | ||| |||| || | ||||||| || ||||| || Sbjct 7132 AAACAGAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGGTTGATCTGCAC 7073 Query 141266 GCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGTACGAG 141325 ||||||||| | |||||| | ||||||||| ||||| || |||||| || || || || Sbjct 7072 GCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAG 7013 Query 141326 GAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCACGGAC 141385 || ||| ||||| | |||||| | || ||| ||| |||||||| ||||| || || Sbjct 7012 CAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCAC 6953 Query 141386 TCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAGAAAGGAATAACTCC 141445 || || || ||||||||||| || || | ||||| |||| |||| || | || Sbjct 6952 ACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAACGGCAGGCAACC 6893 Query 141446 AGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTCGGCGCGAATCATGCCTGCATT 141505 ||||||| |||| ||| | || | ||| ||||| || ||| || || Sbjct 6892 GGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGCGCGCGGATGCGGCCCGCGTT 6833 Query 141506 AATACCAATACCTGCACGCTTACTGATGTATTTCGTAATTGATGCAGCAGCTT-CGTTAA 141564 | || || || || || | || || ||| || | || | | || | || | Sbjct 6832 GACGCCTATGCCGGCGCGTTGCGAGACATACTTCACGATCG-CGCTGGTGGTTGCATTGA 6774 Query 141565 TTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAACTGAACTGGCGTGTCGGAG 141624 | | || || ||| ||| || || | ||||| || ||||||||||| || |||| Sbjct 6773 TGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGCGCGTAGGAG 6714 Query 141625 TACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTTTTTAGTAGAAACTGCATCAT 141684 |||| ||||| | ||| || || || |||| || ||||| ||||| || ||||| | Sbjct 6713 TACGCACACCGGCCATGATAGGCGTAGGCAGCGAGATCTTGAAGGTAGACACCGCATCGT 6654 Query 141685 AGAAACG 141691 | || || Sbjct 6653 AAAAGCG 6647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538279932093760