Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq2003 127 2e-24 >seq2003 Length=7520 Score = 127 bits (140), Expect = 2e-24 Identities = 322/487 (66%), Gaps = 2/487 (0%) Strand=Plus/Plus Query 136355 CGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTATGTCTGGT 136414 || || || ||||| || ||||| ||||| || |||| || || || ||| | ||| Sbjct 6647 CGCTTTTACGATGCGGTGTCTACCTTCAAGATCTCGCTGCCTACGCCTATCATGGCCGGT 6706 Query 136415 GTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTGATAGTCTT 136474 || |||||||| || ||||||||||| || |||||| | || || ||| ||| || || Sbjct 6707 GTGCGTACTCCTACGCGCCAGTTCAGCTCCTGCGTACTGATCGAGTGTGATGACAGCCTG 6766 Query 136475 AATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACAT-TAGTAAGCGTGCTGGTAT 136533 | || || | | || | | || ||| || | | | || || || || || Sbjct 6767 GACAGCATCAATGCAACCACCAGCGCGATCGTGAAGTATGTCTCGCAA-CGCGCCGGCAT 6825 Query 136534 TGGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTGAAGTCAA 136593 || | || ||||| || || || || | || | ||| |||| | Sbjct 6826 AGGCGTCAACGCGGGCCGCATCCGCGCGCTGGGCAGCGAGATACGTGGCGGCGAAGCGCA 6885 Query 136594 GCATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCCA 136653 ||||| ||| | || |||| |||| ||||| | || || || || ||||| || Sbjct 6886 ACATACCGGTTGCCTGCCGTTCTACAAACTGTTCCAGTCTGCGGTGAAATCCTGCTCGCA 6945 Query 136654 AGGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTGA 136713 ||||| || || ||||| || || || ||| || ||| |||||||| | ||||| || Sbjct 6946 GGGCGGTGTGCGGGGTGGGGCGGCGACGTTGTTCTACCCGTTGTGGCACCTTGAAGTCGA 7005 Query 136714 AAACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAGA 136773 | || || || || || |||||| || ||||| ||||||||| | || ||| | || Sbjct 7006 ATCACTGCTGGTGCTGAAAAACAACCGCGGCGTAGAAGAAAACCGTGTGCGTCATCTCGA 7065 Query 136774 TTATGGTGTTCAGATTAATAACCTGATGATTGAACGTTTGATTAAGAATGATTACATCAC 136833 |||||| || ||||| || ||||||| | || |||| ||| | ||||||| Sbjct 7066 TTATGGCGTGCAGATCAACCGCCTGATGTACCAGCGCCTGATCAAGGGCCAGAACATCAC 7125 Query 136834 TCTGTTT 136840 ||||||| Sbjct 7126 TCTGTTT 7132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539834951632240