Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq1773 116 6e-21 seq1601 89.7 8e-13 >seq1773 Length=8977 Score = 116 bits (128), Expect = 6e-21 Identities = 208/304 (68%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGA 201849 |||| |||| || | ||| | || | | |||| | || | ||| |||| ||| | || Sbjct 8121 CATGCAACAGTACCACGACCTGCTACATCATGTGCTGCAACATGGGCATGTTAAAACAGA 8180 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 ||||||||| |||||||| | ||||| || || ||||||||||||| || | || Sbjct 8181 CCGTACCGGCACGGGCACTATTTCTGTATTTGGCTACCAGATGCGCTTTGACCTGGCTGA 8240 Query 201910 AGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCT 201969 ||| || || | ||||||||||||| || || || || ||||| || || |||| Sbjct 8241 AGGGTTCCCCTTACTCACCACCAAAAAAGTCCATCTCAAGTCGATCATTCACGAATTGCT 8300 Query 201970 GTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 |||||| | ||| ||||| || ||| | || || ||| ||||| ||| || Sbjct 8301 CTGGTTCTTGCAGGGCAGTACCAATATTGCATATCTCAAGGAAAACGGCGTCAGCATTTG 8360 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAG 202089 ||| || ||||| ||| | || || | || || ||||| || | || ||||| | Sbjct 8361 GGATGAGTGGGCAGATGCCGAAGGCAACCTTGGTCCAGTGTATGGCTACCAGTGGCGCAA 8420 Query 202090 CTGG 202093 |||| Sbjct 8421 CTGG 8424 >seq1601 Length=10388 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 4032 CGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTAC 4091 |||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||| | Sbjct 2229 CGTAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGCAGTTCGAGTCTGC 2288 Query 4092 TCGAGACAACCA 4103 || | |||||| Sbjct 2289 CCGGGCCAACCA 2300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787911762078680