Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_031126.1
Length=244840
Score E
Sequences producing significant alignments: (Bits) Value
seq1773 87.8 3e-12
>seq1773
Length=8977
Score = 87.8 bits (96), Expect = 3e-12
Identities = 169/251 (67%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 200041 ATGAACCAGTATCTCATCCTCCTAAATCAAGTCCGTCGCGACGGGCATGTAAAGAAAGAC 200100
||| | ||||| | | ||| ||| |||| || | | | |||||||| || | ||||
Sbjct 8122 ATGCAACAGTACCACGACCTGCTACATCATGTGCTGCAACATGGGCATGTTAAAACAGAC 8181
Query 200101 CGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAATCTACAAGAC 200160
|||||||| | || | ||| | || || ||||||||||| | || ||
Sbjct 8182 CGTACCGGCACGGGCACTATTTCTGTATTTGGCTACCAGATGCGCTTTGACCTGGCTGAA 8241
Query 200161 GGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCTGTTG 200220
|| ||||| || | || ||||| || ||||||| || ||||||||||| || |
Sbjct 8242 GGGTTCCCCTTACTCACCACCAAAAAAGTCCATCTCAAGTCGATCATTCACGAATTGCTC 8301
Query 200221 TGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATTTGG 200280
|||||| | | || |||||||| ||||| || || ||| |||| |||||||
Sbjct 8302 TGGTTCTTGCAGGGCAGTACCAATATTGCATATCTCAAGGAAAACGGCGTCAGCATTTGG 8361
Query 200281 GACGAATGGGC 200291
|| || |||||
Sbjct 8362 GATGAGTGGGC 8372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 783269100864000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |