Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq1773 87.8 3e-12 >seq1773 Length=8977 Score = 87.8 bits (96), Expect = 3e-12 Identities = 169/251 (67%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 200041 ATGAACCAGTATCTCATCCTCCTAAATCAAGTCCGTCGCGACGGGCATGTAAAGAAAGAC 200100 ||| | ||||| | | ||| ||| |||| || | | | |||||||| || | |||| Sbjct 8122 ATGCAACAGTACCACGACCTGCTACATCATGTGCTGCAACATGGGCATGTTAAAACAGAC 8181 Query 200101 CGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAATCTACAAGAC 200160 |||||||| | || | ||| | || || ||||||||||| | || || Sbjct 8182 CGTACCGGCACGGGCACTATTTCTGTATTTGGCTACCAGATGCGCTTTGACCTGGCTGAA 8241 Query 200161 GGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCTGTTG 200220 || ||||| || | || ||||| || ||||||| || ||||||||||| || | Sbjct 8242 GGGTTCCCCTTACTCACCACCAAAAAAGTCCATCTCAAGTCGATCATTCACGAATTGCTC 8301 Query 200221 TGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATTTGG 200280 |||||| | | || |||||||| ||||| || || ||| |||| ||||||| Sbjct 8302 TGGTTCTTGCAGGGCAGTACCAATATTGCATATCTCAAGGAAAACGGCGTCAGCATTTGG 8361 Query 200281 GACGAATGGGC 200291 || || ||||| Sbjct 8362 GATGAGTGGGC 8372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783269100864000