Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq1773 113 2e-20 >seq1773 Length=8977 Score = 113 bits (124), Expect = 2e-20 Identities = 298/451 (66%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 51797 TGACCTGAGTAAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGT 51856 ||||||| | | || ||||| | |||||||||| || || ||| || || | | Sbjct 8229 TGACCTGGCTGAAGGGTTCCCCTTACTCACCACCAAAAAAGTCCATCTCAAGTCGATCAT 8288 Query 51857 CGGGGAGTTGCTGTGGTTGCTTTC-GGGCTCTACGAACGTCAACGATCTCCATAAGTACG 51915 || ||||| ||||| ||| | |||| ||| || | ||||| | | ||| Sbjct 8289 TCACGAATTGCTCTGGTT-CTTGCAGGGCAGTACCAATATTGCATATCTCAAGGAAAACG 8347 Query 51916 GCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTA 51975 |||||||||||||||| || ||||| |||| | || ||||| ||||| |||||||| Sbjct 8348 GCGTCAGCATTTGGGATGAGTGGGCAGATGCCGAAGGCAACCTTGGTCCAGTGTATGGCT 8407 Query 51976 AGCAGTGGCGTAGTTGG---GATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAG 52032 | |||||||| | ||| | ||| |||| || | ||||| |||||| ||| Sbjct 8408 ACCAGTGGCGCAACTGGCCTAAGCCTGATGGCAGCCA---TATCGACCAGATCACCCAAG 8464 Query 52033 TCGTCAAATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATG 52092 | | | ||||| | |||||| || || | || || || || ||||||| Sbjct 8465 TGATTGAGCAGATTAAACGCACACCTGATTCACGTCGCCTGATCGTGTCGGCATGGAATG 8524 Query 52093 TGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAG 52152 ||| ||| | || ||| | | | || |||||| | | || || || ||||| | Sbjct 8525 TGGCGGATGTCGAACGCATGAAGCTTCCGCCTTGCCATGCTTTTTTTCAGTTTTATGTTG 8584 Query 52153 CTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTC 52212 | || || || | || ||||| ||||| ||||| ||| || || ||| ||||||| | Sbjct 8585 CCGATGGCAAATTGTCATGCCAGTTGTACCAGCGCAGTGCTGATATTTTCCTGGGCGTGC 8644 Query 52213 CGTTTAACATTGCCAGCTATTCCTTGCTGAC 52243 | || || ||||| || ||||| |||| Sbjct 8645 CTTTCAATATTGCTTCATACGCCTTGTTGAC 8675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190075044648630