Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_031224.1
Length=59443
Score E
Sequences producing significant alignments: (Bits) Value
seq1773 113 2e-20
>seq1773
Length=8977
Score = 113 bits (124), Expect = 2e-20
Identities = 298/451 (66%), Gaps = 8/451 (2%)
Strand=Plus/Plus
Query 51797 TGACCTGAGTAAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGT 51856
||||||| | | || ||||| | |||||||||| || || ||| || || | |
Sbjct 8229 TGACCTGGCTGAAGGGTTCCCCTTACTCACCACCAAAAAAGTCCATCTCAAGTCGATCAT 8288
Query 51857 CGGGGAGTTGCTGTGGTTGCTTTC-GGGCTCTACGAACGTCAACGATCTCCATAAGTACG 51915
|| ||||| ||||| ||| | |||| ||| || | ||||| | | |||
Sbjct 8289 TCACGAATTGCTCTGGTT-CTTGCAGGGCAGTACCAATATTGCATATCTCAAGGAAAACG 8347
Query 51916 GCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTA 51975
|||||||||||||||| || ||||| |||| | || ||||| ||||| ||||||||
Sbjct 8348 GCGTCAGCATTTGGGATGAGTGGGCAGATGCCGAAGGCAACCTTGGTCCAGTGTATGGCT 8407
Query 51976 AGCAGTGGCGTAGTTGG---GATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAG 52032
| |||||||| | ||| | ||| |||| || | ||||| |||||| |||
Sbjct 8408 ACCAGTGGCGCAACTGGCCTAAGCCTGATGGCAGCCA---TATCGACCAGATCACCCAAG 8464
Query 52033 TCGTCAAATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATG 52092
| | | ||||| | |||||| || || | || || || || |||||||
Sbjct 8465 TGATTGAGCAGATTAAACGCACACCTGATTCACGTCGCCTGATCGTGTCGGCATGGAATG 8524
Query 52093 TGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAG 52152
||| ||| | || ||| | | | || |||||| | | || || || ||||| |
Sbjct 8525 TGGCGGATGTCGAACGCATGAAGCTTCCGCCTTGCCATGCTTTTTTTCAGTTTTATGTTG 8584
Query 52153 CTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTC 52212
| || || || | || ||||| ||||| ||||| ||| || || ||| ||||||| |
Sbjct 8585 CCGATGGCAAATTGTCATGCCAGTTGTACCAGCGCAGTGCTGATATTTTCCTGGGCGTGC 8644
Query 52213 CGTTTAACATTGCCAGCTATTCCTTGCTGAC 52243
| || || ||||| || ||||| ||||
Sbjct 8645 CTTTCAATATTGCTTCATACGCCTTGTTGAC 8675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190075044648630
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |