Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq315 170 4e-37 seq1616 145 2e-29 seq1314 140 7e-28 seq113 100 6e-16 seq479 93.3 9e-14 seq1088 84.2 5e-11 seq18 84.2 5e-11 >seq315 Length=59289 Score = 170 bits (188), Expect = 4e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| ||||| || | ||| ||| || |||||||||||||| Sbjct 38569 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTC 38628 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| || || || || || ||||||||||||| || || |||||| ||| Sbjct 38629 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38688 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || || | || || | ||| || | || || Sbjct 38689 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACATTGTCAATCGAGTCAGACGGCTCCAC 38747 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| || ||||| ||||| ||||| |||||||| || Sbjct 38748 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTT 38798 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| ||||| || | ||| || || |||||||| |||||| Sbjct 38266 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTC 38325 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| || || || || || ||||||||||||| || || |||||| ||| Sbjct 38326 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38385 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || || | || || | ||| || | || || Sbjct 38386 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACATTGTCAATCGAGTCAGACGGCTCCAC 38444 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 38445 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38492 >seq1616 Length=10241 Score = 145 bits (160), Expect = 2e-29 Identities = 333/494 (67%), Gaps = 22/494 (4%) Strand=Plus/Minus Query 301420 ATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACAT 301479 ||||| || | ||||| ||||||||||| ||||| || || ||| || || || Sbjct 9063 ATGCTCAAGCTTGACCCTTATATCAACGTTGATCCCGGCACCATGTCGCCTTTCCAGCAC 9004 Query 301480 GGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAA 301539 || ||||||||||| ||||||||||| || |||||||| || || || || || ||||| Sbjct 9003 GGTGAAGTGTTCGTCACGGATGATGGCGCCGAAACCGACCTTGACCTTGGACATTACGAG 8944 Query 301540 CGTTTCACTTCATTAACCCTTAAGCGTGAAAG-----TAATTTTACGACTGGCCAAGTTT 301594 || |||| ||| || | || || |||| || || || |||||||| ||| Sbjct 8943 CGCTTCA--TCAGTAGC---AAAATGTCAAAGCGCAACAACTTCACCACTGGCCAGATTT 8889 Query 301595 ATTTAAAAGTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTG 301654 | || || ||| |||| || || ||| ||||| || ||||| || || || Sbjct 8888 ACGAAACCGTCATCAAAAAAGAGCGTCGCGGTGAGTATCTGGGCAAGACCGTTCAGGTCA 8829 Query 301655 TTCCCCACATCACCGATGAAATCAAAAGAAGAATTCA--CATTGCGGCTGAAAAATCAGA 301712 |||| |||||||| ||||||||| || | | ||| | | || |||||| | || Sbjct 8828 TTCCGCACATCACAGATGAAATC-AAGGCCCACATCAAGCGTGGC-GCTGAAGGTGCGGA 8771 Query 301713 TATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGA 301772 | || || | ||| | || || ||||| || ||||| || || || |||||| | || Sbjct 8770 TGTAGCCATCGTAGAGGTGGGCGGCACGGTAGGCGATATTGAGTCCCTGCCTTTTCTTGA 8711 Query 301773 AGCGATTCGTCAACTCTCTCATGACGAAGGAACGGCCAA----TGTTCTGTTCATTCATC 301828 ||| ||||| ||| | ||| || || | | |||| |||| || |||| | Sbjct 8710 AGCCATTCGCCAAATGGGGTTTGAAGAGGGCAAGACCAACGCGTGTTACGTGCATT--TG 8653 Query 301829 TCGTGCTCTTACCCTATATAGCGACTGCTGGTGAGTTGAAATCAAAGCCAGCACAGCATT 301888 | | | || |||| || | || || || ||||| ||| | ||||| | ||||| | Sbjct 8652 ACCT--TGTTGCCCTGGATTCCCACCGCAGGCGAGTTAAAAACCAAGCCTACGCAGCACT 8595 Query 301889 CGGTTAAAGAATTG 301902 | || ||||| ||| Sbjct 8594 CTGTGAAAGAGTTG 8581 >seq1314 Length=13110 Score = 140 bits (154), Expect = 7e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| | |||||||| || || || ||||| || |||||||||||| Sbjct 2069 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2128 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| ||||| || ||||| || || ||||| ||| || || | || Sbjct 2129 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGC-TTCACATTGTC 2187 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||||||||| || ||||| ||||| || || Sbjct 2188 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAA 2247 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 2248 GATCTGCAT 2256 >seq113 Length=57615 Score = 100 bits (110), Expect = 6e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 316948 ATGAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGCA 317007 ||||| ||||| | |||| | | ||| || | | |||| ||||| ||| | || Sbjct 48146 ATGAACTCAACCACAGACAGCTCCGCTTCCGAAGCCTGCAGGTTGTGCTCCACAAACACA 48087 Query 317008 GTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATC 317067 || ||||| || | || || || |||| |||||||||| ||| || | |||| Sbjct 48086 GTCTTCAGCTCGTCGCGGCTTGGAAATCCCTCCAGCTGACCGTTCGAAATGGCGCGCATC 48027 Query 317068 AGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGA 317127 || |||||||| ||| || ||||| ||||| ||||| || || | || ||| ||| Sbjct 48026 AGCGTCGACTTACCACACCCGTTGGGACCGCACAGACCGTAACGGTGACCACGCTTAAGA 47967 Query 317128 TTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCA 317187 | ||| | ||||||| | ||| ||||||| || || || ||||||||||| | | Sbjct 47966 CGGAGACGAGCATTGTTCAACAAGATCATACCACCGTAAGCAAGCGAGAACTCACAGTTA 47907 Query 317188 CACAGGTC 317195 || ||||| Sbjct 47906 CAGAGGTC 47899 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||||||||| || ||||||| ||||||||||| || | ||| || || Sbjct 48923 TCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTTGCAGTCTCATCGAGG 48864 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||| ||||| ||||||||||| | |||||| || ||| Sbjct 48863 TGCGACTCAATGTGGTGGAAAGCATGCTGAGCCACGTAAGCGAAACGCATGGAAGGGTGC 48804 Query 316282 TTCCA 316286 ||||| Sbjct 48803 TTCCA 48799 >seq479 Length=33999 Score = 93.3 bits (102), Expect = 9e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| ||||| ||||| || | ||| || || |||||||||||||| | Sbjct 31132 ACCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 31191 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||||||||| || || || || ||||| | ||| || |||||| ||| Sbjct 31192 CAGAGTACGACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGCGG 31251 Query 282992 AATACC 282997 ||| || Sbjct 31252 AATTCC 31257 >seq1088 Length=17152 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| || Sbjct 209 TTAGTATAGTGGTTAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 151 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| || Sbjct 435 TTAGTATAGTGGTTAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 377 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| || Sbjct 1252 TTAGTATAGTGGTTAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 1194 >seq18 Length=88283 Score = 84.2 bits (92), Expect = 5e-11 Identities = 194/290 (67%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 273774 AGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCA 273833 |||| ||| || || |||| || || || ||||| || ||||||| || | |||| Sbjct 58963 AGTTGCGTAAAGATATACCGGGGGCTAGCTGCATCCTTACCTCCTTGCAACCGAGTACCA 58904 Query 273834 AACTGACCCTCGGG---CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCC 273890 || || || || ||| ||| | | ||||||| || ||| |||| || ||| Sbjct 58903 AATTGGCCGGATGGATACAGCAGCGGG---AGGTTGTTGGAGCCAACGAAATCTTGGGCC 58847 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 |||||||| || ||| || | || | || |||||||| || || ||||||| | Sbjct 58846 ATATTCACAATCGTCGAATGCAACGAAGCTTCACCGTGGTGGTAAGCTGTGTGTTCACTG 58787 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGA---ATGCG 274007 || || | ||| || ||||| || ||||| |||| || ||||| | | ||| Sbjct 58786 CAGTAGCCTGCCAGCTGCGCCACCTTTACTTCGCTGGTCAGCTTGCGCTTCATACAAGCG 58727 Query 274008 GAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 || | ||| || |||||||| ||||| |||||| || || ||||| Sbjct 58726 AAA---AGCACTTTGCGCTGCGAAATCTTGAGCCCATCGACCACAGATGG 58680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046614702475082