Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq315 170 4e-37
seq1616 145 2e-29
seq1314 140 7e-28
seq113 100 6e-16
seq479 93.3 9e-14
seq1088 84.2 5e-11
seq18 84.2 5e-11
>seq315
Length=59289
Score = 170 bits (188), Expect = 4e-37
Identities = 178/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| ||||||||||| ||||| || | ||| ||| || ||||||||||||||
Sbjct 38569 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTC 38628
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| ||||| || || || || || ||||||||||||| || || |||||| |||
Sbjct 38629 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38688
Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| ||| || || | || || | ||| || | || ||
Sbjct 38689 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACATTGTCAATCGAGTCAGACGGCTCCAC 38747
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||||||||| || ||||| ||||| ||||| |||||||| ||
Sbjct 38748 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTT 38798
Score = 165 bits (182), Expect = 2e-35
Identities = 175/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| ||||||||||| ||||| || | ||| || || |||||||| ||||||
Sbjct 38266 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTC 38325
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| ||||| || || || || || ||||||||||||| || || |||||| |||
Sbjct 38326 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38385
Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| ||| || || | || || | ||| || | || ||
Sbjct 38386 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACATTGTCAATCGAGTCAGACGGCTCCAC 38444
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 38445 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38492
>seq1616
Length=10241
Score = 145 bits (160), Expect = 2e-29
Identities = 333/494 (67%), Gaps = 22/494 (4%)
Strand=Plus/Minus
Query 301420 ATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACAT 301479
||||| || | ||||| ||||||||||| ||||| || || ||| || || ||
Sbjct 9063 ATGCTCAAGCTTGACCCTTATATCAACGTTGATCCCGGCACCATGTCGCCTTTCCAGCAC 9004
Query 301480 GGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAA 301539
|| ||||||||||| ||||||||||| || |||||||| || || || || || |||||
Sbjct 9003 GGTGAAGTGTTCGTCACGGATGATGGCGCCGAAACCGACCTTGACCTTGGACATTACGAG 8944
Query 301540 CGTTTCACTTCATTAACCCTTAAGCGTGAAAG-----TAATTTTACGACTGGCCAAGTTT 301594
|| |||| ||| || | || || |||| || || || |||||||| |||
Sbjct 8943 CGCTTCA--TCAGTAGC---AAAATGTCAAAGCGCAACAACTTCACCACTGGCCAGATTT 8889
Query 301595 ATTTAAAAGTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTG 301654
| || || ||| |||| || || ||| ||||| || ||||| || || ||
Sbjct 8888 ACGAAACCGTCATCAAAAAAGAGCGTCGCGGTGAGTATCTGGGCAAGACCGTTCAGGTCA 8829
Query 301655 TTCCCCACATCACCGATGAAATCAAAAGAAGAATTCA--CATTGCGGCTGAAAAATCAGA 301712
|||| |||||||| ||||||||| || | | ||| | | || |||||| | ||
Sbjct 8828 TTCCGCACATCACAGATGAAATC-AAGGCCCACATCAAGCGTGGC-GCTGAAGGTGCGGA 8771
Query 301713 TATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGA 301772
| || || | ||| | || || ||||| || ||||| || || || |||||| | ||
Sbjct 8770 TGTAGCCATCGTAGAGGTGGGCGGCACGGTAGGCGATATTGAGTCCCTGCCTTTTCTTGA 8711
Query 301773 AGCGATTCGTCAACTCTCTCATGACGAAGGAACGGCCAA----TGTTCTGTTCATTCATC 301828
||| ||||| ||| | ||| || || | | |||| |||| || |||| |
Sbjct 8710 AGCCATTCGCCAAATGGGGTTTGAAGAGGGCAAGACCAACGCGTGTTACGTGCATT--TG 8653
Query 301829 TCGTGCTCTTACCCTATATAGCGACTGCTGGTGAGTTGAAATCAAAGCCAGCACAGCATT 301888
| | | || |||| || | || || || ||||| ||| | ||||| | ||||| |
Sbjct 8652 ACCT--TGTTGCCCTGGATTCCCACCGCAGGCGAGTTAAAAACCAAGCCTACGCAGCACT 8595
Query 301889 CGGTTAAAGAATTG 301902
| || ||||| |||
Sbjct 8594 CTGTGAAAGAGTTG 8581
>seq1314
Length=13110
Score = 140 bits (154), Expect = 7e-28
Identities = 146/189 (77%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
||||||||||||||||| | |||||||| || || || ||||| || ||||||||||||
Sbjct 2069 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2128
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030
| ||| || |||||| ||||| || ||||| || || ||||| ||| || || | ||
Sbjct 2129 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGC-TTCACATTGTC 2187
Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||| || | || || || || ||||||||||| || ||||| ||||| || ||
Sbjct 2188 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAA 2247
Query 283091 TATCTGCAT 283099
||||||||
Sbjct 2248 GATCTGCAT 2256
>seq113
Length=57615
Score = 100 bits (110), Expect = 6e-16
Identities = 171/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 316948 ATGAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGCA 317007
||||| ||||| | |||| | | ||| || | | |||| ||||| ||| | ||
Sbjct 48146 ATGAACTCAACCACAGACAGCTCCGCTTCCGAAGCCTGCAGGTTGTGCTCCACAAACACA 48087
Query 317008 GTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATC 317067
|| ||||| || | || || || |||| |||||||||| ||| || | ||||
Sbjct 48086 GTCTTCAGCTCGTCGCGGCTTGGAAATCCCTCCAGCTGACCGTTCGAAATGGCGCGCATC 48027
Query 317068 AGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGA 317127
|| |||||||| ||| || ||||| ||||| ||||| || || | || ||| |||
Sbjct 48026 AGCGTCGACTTACCACACCCGTTGGGACCGCACAGACCGTAACGGTGACCACGCTTAAGA 47967
Query 317128 TTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCA 317187
| ||| | ||||||| | ||| ||||||| || || || ||||||||||| | |
Sbjct 47966 CGGAGACGAGCATTGTTCAACAAGATCATACCACCGTAAGCAAGCGAGAACTCACAGTTA 47907
Query 317188 CACAGGTC 317195
|| |||||
Sbjct 47906 CAGAGGTC 47899
Score = 91.5 bits (100), Expect = 3e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221
|| ||||||||||| || ||||||| ||||||||||| || | ||| || ||
Sbjct 48923 TCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTTGCAGTCTCATCGAGG 48864
Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281
|| ||| |||||||||||||| ||||| ||||||||||| | |||||| || |||
Sbjct 48863 TGCGACTCAATGTGGTGGAAAGCATGCTGAGCCACGTAAGCGAAACGCATGGAAGGGTGC 48804
Query 316282 TTCCA 316286
|||||
Sbjct 48803 TTCCA 48799
>seq479
Length=33999
Score = 93.3 bits (102), Expect = 9e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| |||||||| ||||| ||||| || | ||| || || |||||||||||||| |
Sbjct 31132 ACCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 31191
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || ||||||||||| || || || || ||||| | ||| || |||||| |||
Sbjct 31192 CAGAGTACGACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGCGG 31251
Query 282992 AATACC 282997
||| ||
Sbjct 31252 AATTCC 31257
>seq1088
Length=17152
Score = 84.2 bits (92), Expect = 5e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| ||
Sbjct 209 TTAGTATAGTGGTTAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 151
Score = 84.2 bits (92), Expect = 5e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| ||
Sbjct 435 TTAGTATAGTGGTTAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 377
Score = 84.2 bits (92), Expect = 5e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| ||
Sbjct 1252 TTAGTATAGTGGTTAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 1194
>seq18
Length=88283
Score = 84.2 bits (92), Expect = 5e-11
Identities = 194/290 (67%), Gaps = 12/290 (4%)
Strand=Plus/Minus
Query 273774 AGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCA 273833
|||| ||| || || |||| || || || ||||| || ||||||| || | ||||
Sbjct 58963 AGTTGCGTAAAGATATACCGGGGGCTAGCTGCATCCTTACCTCCTTGCAACCGAGTACCA 58904
Query 273834 AACTGACCCTCGGG---CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCC 273890
|| || || || ||| ||| | | ||||||| || ||| |||| || |||
Sbjct 58903 AATTGGCCGGATGGATACAGCAGCGGG---AGGTTGTTGGAGCCAACGAAATCTTGGGCC 58847
Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950
|||||||| || ||| || | || | || |||||||| || || ||||||| |
Sbjct 58846 ATATTCACAATCGTCGAATGCAACGAAGCTTCACCGTGGTGGTAAGCTGTGTGTTCACTG 58787
Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGA---ATGCG 274007
|| || | ||| || ||||| || ||||| |||| || ||||| | | |||
Sbjct 58786 CAGTAGCCTGCCAGCTGCGCCACCTTTACTTCGCTGGTCAGCTTGCGCTTCATACAAGCG 58727
Query 274008 GAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057
|| | ||| || |||||||| ||||| |||||| || || |||||
Sbjct 58726 AAA---AGCACTTTGCGCTGCGAAATCTTGAGCCCATCGACCACAGATGG 58680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046614702475082
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