Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5172 95.1 1e-14 >seq5172 Length=1594 Score = 95.1 bits (104), Expect = 1e-14 Identities = 301/459 (66%), Gaps = 12/459 (3%) Strand=Plus/Plus Query 23208 AACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAA 23267 ||||||| ||||||||| || |||||| |||| || ||||| || || || | ||| Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011 Query 23268 TGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT-- 23325 ||| || ||||||||| ||||| ||||| || | ||| || || | | Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATA--CATTTTGGGCTCACCC 1069 Query 23326 AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTT 23385 | | | || || | || || ||||| || || || || ||||| ||| ||| Sbjct 1070 AGTGTCAGTAGCAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTC 1129 Query 23386 ATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCA 23445 ||||| || || ||| || | ||||| | ||| | |||||| | ||| || Sbjct 1130 ATACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCG 1189 Query 23446 TCTTTAATTATTTGAACAATAACTTCTTCA-CTAGGTGGATATTTTAAA--TACTTAAAC 23502 || ||| || | || | |||| | || | ||||| ||| | || || Sbjct 1190 TCGGCAATAATCT---CACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246 Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562 | || || || || ||| ||| | ||||||||| | | |||| |||||| ||||| Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306 Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGA 23621 | || || ||||| | || || ||||||| ||| || || | |||| | | | || || Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGG-AGCAGAAGCTACCAGA 1365 Query 23622 AAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACG 23660 ||||||||| || |||| || |||||||| ||||| || Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCG 1404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521427487836200