Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq5172 95.1 1e-14
>seq5172
Length=1594
Score = 95.1 bits (104), Expect = 1e-14
Identities = 301/459 (66%), Gaps = 12/459 (3%)
Strand=Plus/Plus
Query 23208 AACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAA 23267
||||||| ||||||||| || |||||| |||| || ||||| || || || | |||
Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011
Query 23268 TGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT-- 23325
||| || ||||||||| ||||| ||||| || | ||| || || | |
Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATA--CATTTTGGGCTCACCC 1069
Query 23326 AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTT 23385
| | | || || | || || ||||| || || || || ||||| ||| |||
Sbjct 1070 AGTGTCAGTAGCAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTC 1129
Query 23386 ATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCA 23445
||||| || || ||| || | ||||| | ||| | |||||| | ||| ||
Sbjct 1130 ATACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCG 1189
Query 23446 TCTTTAATTATTTGAACAATAACTTCTTCA-CTAGGTGGATATTTTAAA--TACTTAAAC 23502
|| ||| || | || | |||| | || | ||||| ||| | || ||
Sbjct 1190 TCGGCAATAATCT---CACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246
Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562
| || || || || ||| ||| | ||||||||| | | |||| |||||| |||||
Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306
Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGA 23621
| || || ||||| | || || ||||||| ||| || || | |||| | | | || ||
Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGG-AGCAGAAGCTACCAGA 1365
Query 23622 AAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACG 23660
||||||||| || |||| || |||||||| ||||| ||
Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCG 1404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521427487836200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |