Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq732 168 1e-36 seq91 96.9 7e-15 seq7203 95.1 3e-14 seq1448 89.7 1e-12 seq2030 86.0 1e-11 >seq732 Length=22061 Score = 168 bits (186), Expect = 1e-36 Identities = 613/937 (65%), Gaps = 33/937 (4%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 || || |||||| | | ||| ||||| | |||||||||||||||| || | |||||| Sbjct 9537 TTTCCGATCCAAGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAAGCTTCGTTCTGG 9478 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATGA 229877 || ||||||| | | || ||| || || |||||| | ||| |||| || Sbjct 9477 ACTGCTGAGGA-GCTAGACTTGGTGCACGATCTCAAGGACTGG---GCGAACCTCACGGA 9422 Query 229878 CGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 229937 | | || ||||| || ||||| || | || | || || |||| | ||||| ||||| Sbjct 9421 CAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATTGT 9362 Query 229938 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 229997 || || |||||| | |||||||| ||||| || || || || ||| || Sbjct 9361 GAACGAGAATCTGGCCATGAACTTTAGCAATGAAGTGCAAGTGCCGGAAGCTCGGTGCTT 9302 Query 229998 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGA 230057 ||||| | ||| | | ||| ||||| || ||| ||| | ||||| || || Sbjct 9301 TTATGGCTTCCAGATCGCGATTGAAAACATCCACTCGGAAGTCTATTCGCTGCTCATTGA 9242 Query 230058 CGCGCTTATTTCCGA--CGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAACATC 230115 | || ||| || ||| |||| ||| | | ||| | || ||||| | |||| Sbjct 9241 CACGTACATTAAAGAGGCGACGGAGAA-GGATC-ACCTTCTGCGCGCGATTGAGACCATC 9184 Query 230116 CCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTG--GTAAAT-CG 230172 ||| |||| || || || || ||||| | || ||| || || ||| | || Sbjct 9183 CCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCTTCG 9124 Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 | || ||||| || | || | | | || ||||| ||| | || || || ||| Sbjct 9123 TACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTC 9064 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||| | |||||||||||| ||| ||| | |||||||||||| | | || |||||| Sbjct 9063 TGCTCGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAG 9004 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-CTTATGTATTCAAAGCT 230351 |||| ||||| || ||||| | || || | ||| | || ||||| || ||||| Sbjct 9003 CTCATTAGTCGAGATGAGGGCATGCA-CACGGACTTTGCGTGCCTCATGTACTCCAAGCT 8945 Query 230352 CCAGAACAAGCTACCATTCGA-GAC--GGTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 ||||||||| || ||| ||| ||| | |||||| || ||||| | Sbjct 8944 AGTGAACAAGCTGCC---CGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGAT 8888 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 ||| | ||||| | | ||| | | || | || |||||||||||| | | || Sbjct 8887 CGAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCT 8828 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT-TACG--- 230524 ||| | |||||||| || || ||||| |||||| ||||| ||| | | || Sbjct 8827 CATGTGCCAGTACATTGAGTTTGTAGCGGACCGC----CTGTTGTACTCGCTCGGCGTGT 8772 Query 230525 AGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584 ||| | | | | | |||||||| |||| | ||||| | || |||||||| || | Sbjct 8771 CGAAGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCA 8712 Query 230585 AGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAGGCCTGGTGT-GATGAAGC- 230641 |||| ||||| ||||| |||||||| | || || || ||| ||||||| | || || Sbjct 8711 AGACGAACTTTTTCGAGAAGCGTGTGGGCGAGTACTCCAAGG-CTGGTGTAGGTGTCGCG 8653 Query 230642 -CCGAAGACAATATTTTTGCTATTGACGATGAttttt 230677 |||||||| | | || || |||||| |||||||| Sbjct 8652 GCCGAAGACCAGGTATTCACTCTTGACGCTGATTTTT 8616 >seq91 Length=60761 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||||||||| || ||||||| ||||| |||||||| | ||| || || Sbjct 11603 CTCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTTGCAGTCTCATCGAG 11662 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||||||||| ||||||||||| | |||||| || || Sbjct 11663 GTGCGACTCAATGTGGTGGAAAGCATGCTGAGCCACGTAAGCGAAACGCATGGAAGGGTG 11722 Query 319110 CTTCCA 319115 |||||| Sbjct 11723 CTTCCA 11728 Score = 91.5 bits (100), Expect = 3e-13 Identities = 402/634 (63%), Gaps = 23/634 (4%) Strand=Plus/Plus Query 319398 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 319457 || || |||||| | ||||||||| |||||||| |||||| ||| | | ||||| Sbjct 12011 CTGCTCCACGAATTTGGACAGATTGCCCTTGTAGATCTTCAACTTACGCGTC---TCGTA 12067 Query 319458 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 319517 || ||||| ||||| || ||||||||| || |||||||| ||||| || | | Sbjct 12068 GTGAATAATGTTCGTGCAGACCTTGTCGAGGAAACCAGAGTCGTGCGACACCATGATCGA 12127 Query 319518 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAG 319577 | |||| | ||| | || || | || ||| |||||| ||| | Sbjct 12128 GGTCACGTTAGTCAGGCCAGTGAGATAATTCTCCAGCCAAGCCACGTTCTTGACATCCAA 12187 Query 319578 ATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 319637 ||||| |||||||| || || |||| | | || ||| | ||||| ||||| || || Sbjct 12188 GTGGTTCGTCGGCTCATCGAGCAGCAAGATATCAGCCTTCCGCAGCATAGCACGAGCCAG 12247 Query 319638 AGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAAT 319697 | | |||||| ||||| || || ||||||||| | ||| |||| || || Sbjct 12248 CTCCAATTTCATCTTCCAACCGCCAGAAAGAGTGCCGA------CAGCTTGGGCCTGCAT 12301 Query 319698 ATCA------AAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 319751 ||| ||||| || |||||| ||| || | || | | | Sbjct 12302 CTCATCTGTGAAGCCCACACCAGATAGAGTGTCCTCGACCTCCTTGCGCGG------GGT 12355 Query 319752 TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCC 319811 ||||| | | ||||| ||||| |||| | || | | | || || | Sbjct 12356 GTCCTTGAGGTCCTCATCCACCAGGATGAACTCAACCACAGACAGCTCCGCTTCCGAAGC 12415 Query 319812 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAAC-CCTTCAA 319870 | || | ||| ||||| | |||| |||| | || || | |||| || || | Sbjct 12416 CTGCAGGTTGTGCTCCACAAACACAGTCTTCAGCTCGTC-GCGGCTTGGAAATCCCTCCA 12474 Query 319871 GCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACA 319930 |||| |||||| ||| ||||||||||| || || ||||| |||||| || || |||| Sbjct 12475 GCTGACCGTTCGAAATGGCGCGCATCAGCGTCGACTTACCACACCCGTTGGGACCGCACA 12534 Query 319931 GACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCAC 319990 ||||||| |||| || || || || || || | ||||||| | || | |||| Sbjct 12535 GACCGTAACGGTGACCACGCTTAAGACGGAGACGAGCATTGTTCAACAAGATCATACCAC 12594 Query 319991 CATATGCCAGAGAAAATTCACAATCACACAGATC 320024 | || || || || || ||||| | ||| || || Sbjct 12595 CGTAAGCAAGCGAGAACTCACAGTTACAGAGGTC 12628 >seq7203 Length=1522 Score = 95.1 bits (104), Expect = 3e-14 Identities = 172/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 230394 AGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTG 230452 ||| ||||| |||| |||||| || ||| | ||| || | || ||| | || |||| Sbjct 904 AGATGCAGTAGAAATCGAAAAAGAATTCGTAACTGATGCGCTACC-TGTTTCGTTGATTG 846 Query 230453 GCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTG 230512 ||||||| || ||||| ||| | || ||||| || || || ||||| | | |||| | Sbjct 845 GCATGAATGCCGAACTAATGTGCCAATACATTGAGTTTGTGGCCGATCACCTTTTGGAAT 786 Query 230513 CACTTGG--TTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCAT 230570 || | || ||| | ||| | || || | | || || || | || ||||| | || Sbjct 785 CATTAGGAGTTA--ATAAAATTTATAATGCGACCAATCCTTTCGATTTCATGGATATGAT 728 Query 230571 TTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGG 230630 |||| | ||||| || ||||| ||||||||||| ||||| |||| || || | | || Sbjct 727 TTCGTTACAAGGCAAAACCAATTTCTTCGAAAAACGTGTAGGTGAATACCAAAAAGCGGG 668 Query 230631 TGTGATG 230637 ||| ||| Sbjct 667 TGTTATG 661 >seq1448 Length=26636 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||| |||||| |||||||||| |||| ||||||| ||||||||||| |||| | Sbjct 14124 GCCCGTCTATCTCAGTTGGTAGAGCGCATGACTCTTAATCTTGTGGTCGTGGGCTCGATC 14183 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14184 CCCACGGTGGGC 14195 >seq2030 Length=8043 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| | ||||||| | ||||||||||||||||||| Sbjct 122 CCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 181 Query 165771 CCACG 165775 ||||| Sbjct 182 CCACG 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057660193970180