Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2192 116 4e-21 >seq2192 Length=7014 Score = 116 bits (128), Expect = 4e-21 Identities = 187/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || || || |||||||| || || || ||| ||||| ||||| | || Sbjct 6454 TTCATGTAGCGGATTTTTCCGAATACATCCCGCTCAAACCAAGCTCTATCGTGCACGCCT 6513 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 ||| | |||| | ||||| ||||| ||||||||| ||||||| |||||||||| Sbjct 6514 CCTATAGACCATGCTAAGCCCACATATCCATTGGGATCCCGACCATCTAGCTCGTATTTA 6573 Query 119903 TCGTTTAAGTAGATACAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtt 119962 || || | || || | || || | || || ||||| | | ||||||||| | | Sbjct 6574 TCATTGAGATATATCCCGATGCGAAGGGCGACCTCCGGAGTTTTGGTCCATTCCAAAAGT 6633 Query 119963 tttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGT 120022 || || |||||||||||||||| || |||||||| || ||| ||||| | || Sbjct 6634 TTCTTCGCCCAGTACATACGTATATAGCCATGCATCTTGCCTCGTTTTACCATCTCCAGC 6693 Query 120023 TGTGCGGCGTTCCATAAGGGATCGTGTGT 120051 || | ||| ||||| | ||||| || || Sbjct 6694 TGAGTGGCATTCCACAGAGGATCATGCGT 6722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517467411798480