Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq7203 154 2e-32
seq4369 134 1e-26
seq2192 132 5e-26
>seq7203
Length=1522
Score = 154 bits (170), Expect = 2e-32
Identities = 569/878 (65%), Gaps = 39/878 (4%)
Strand=Plus/Plus
Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960
||||||| | ||||||| |||| || |||||||||||||| || ||||| || | |||
Sbjct 664 AACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAA 723
Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020
|| || | ||||| ||||| || ||||| || || | | || ||| || |
Sbjct 724 CGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAA 783
Query 16021 T---TCCGTAACTAATCT-ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAAT 16076
| ||| || || | ||| || ||||| || || ||||| ||||||| ||| ||
Sbjct 784 TGATTCC--AA--AAGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCAT 839
Query 16077 TAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCG 16136
| || || || | || || || || | |||| |||| || ||| || | || |
Sbjct 840 TCATGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTG 899
Query 16137 CTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTG-TA--TGGTTTAGGTGTT--- 16190
| ||||| | | |||| | | |||| || ||| || || | | |||
Sbjct 900 CATCTTTCACTAAATCG-----TAGATTTTCTGAGGGTCATACTTGTTCTGAATGTAATT 954
Query 16191 --TAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTT 16248
|| | | | ||| || ||||| | |||| ||||| || | || | || ||
Sbjct 955 AGTATATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATT 1014
Query 16249 GGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATG 16307
|| || || | || |||||| || ||||| || ||||||||||||| |||| ||||
Sbjct 1015 AGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATG 1073
Query 16308 ACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG 16367
| || || ||||| ||||| || ||| ||||| || | | || || | ||
Sbjct 1074 AGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAA-GTTT 1132
Query 16368 CATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCG 16427
| | |||| | ||||| | |||| |||||||||| |||| ||| ||
Sbjct 1133 C--CGTTATCA---ATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATAT 1187
Query 16428 TTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCA 16487
|||||||| |||| || ||| ||| || | || | ||||| | ||||||||
Sbjct 1188 GGTCTATGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCA 1247
Query 16488 GTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC 16547
| | ||| ||||||| || ||||| || || ||||| || |||||||| |||
Sbjct 1248 GAAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATT 1307
Query 16548 GAGCCTCCGCTATTTGTACTTCCACG-----TAAAATCGTTCCGCCAGGTTCTCATTCAC 16602
|| || || | |||||| ||| |||||| | | |||| ||| ||||| ||
Sbjct 1308 TTGCTTCGGCAAATTGTAC----ACGAGAGATAAAATTGA-CTGCCAAGTTTTCATTAAC 1362
Query 16603 GATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGA 16662
|||||| ||| ||||||||||||||||||| || ||| |||| || ||
Sbjct 1363 GATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATC 1422
Query 16663 TGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722
| || | | ||| ||||| ||||| |||| || | |||||| | ||||| ||
Sbjct 1423 GCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAA 1482
Query 16723 GCTAGCCACTGCCTTTTTATACATTTTCCAAATATCAT 16760
|||| | |||||||| | || ||| |||||||
Sbjct 1483 TGAAGCCTCATGTTTTTTATAAAATTGCCAGATATCAT 1520
>seq4369
Length=2652
Score = 134 bits (148), Expect = 1e-26
Identities = 381/581 (66%), Gaps = 12/581 (2%)
Strand=Plus/Minus
Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264
|| || || ||||||| |||||||| | || | ||| || || ||||| || |||
Sbjct 2617 GCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCT 2558
Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324
|||||| || ||||| || ||||| | || | | || | || || ||||||||
Sbjct 2557 GGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATC 2498
Query 16325 CCCTCAACAG--ATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAA 16382
||||| || | ||| || || || | || || || | ||| | |||| |
Sbjct 2497 CCCTCCACCGCCATG--AAGGCAATGAGACGCTCAGCAAATGTACCCTCTTCT------A 2446
Query 16383 TCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAA 16442
|||| ||| || |||||| ||||| | || || || |||| | | ||
Sbjct 2445 TCCACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAA 2386
Query 16443 ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502
| || || | ||||| ||| | ||||| |||||||||| | | ||| | |
Sbjct 2385 ATAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCT 2326
Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562
| | |||||||| || || |||||||||||||||| || || ||||||| | |
Sbjct 2325 CAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCT 2266
Query 16563 GTACTTCCA-CGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
| || || | |||||| | || ||||||||||| || || || || || |||
Sbjct 2265 GCACCTCTTTCATAAAATTCA-CAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCA 2207
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCT 16681
|| |||||||| || ||| |||||||| | |||| ||| | || | | ||||||
Sbjct 2206 AAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCC 2147
Query 16682 TTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTA 16741
|| || | ||| | ||| | |||||| | ||||||||| || | || ||||||
Sbjct 2146 GCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTA 2087
Query 16742 TACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782
|||| | ||| ||||||| | | |||||| ||| |||
Sbjct 2086 TACAACTGCCATATATCATCATGCTTGATGGGATATAGGAC 2046
>seq2192
Length=7014
Score = 132 bits (146), Expect = 5e-26
Identities = 193/270 (71%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995
|||||||| || || ||||| ||||| ||||| ||| ||||| ||||| | |||
Sbjct 6454 TTCATGTAGCGGATTTTTCCGAATACATCCCGCTCAAACCAAGCTCTATCGTGCACGCCT 6513
Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055
||| | |||| | ||||| ||||| |||||||| || |||| |||||| |||
Sbjct 6514 CCTATAGACCATGCTAAGCCCACATATCCATTGGGATCCCGACCATCTAGCTCGTATTTA 6573
Query 119056 TCGTTTAAGTAGATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtt 119115
|| || | || || | || || | || |||||||| || ||||||||| | |
Sbjct 6574 TCATTGAGATATATCCCGATGCGAAGGGCGACCTCCGGAGTTTTGGTCCATTCCAAAAGT 6633
Query 119116 tttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCG-TTAATCATCTGAAG 119174
|| || |||||||||||||||| ||| || ||||| || ||||| || | ||||| ||
Sbjct 6634 TTCTTCGCCCAGTACATACGTATATAGCCATGCATCTT-GCCTCGTTTTACCATCTCCAG 6692
Query 119175 TTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204
|| | || ||||| |||||||| || ||
Sbjct 6693 CTGAGTGGCATTCCACAGAGGATCATGCGT 6722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511337138069520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |