Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq7203 154 2e-32 seq4369 134 1e-26 seq2192 132 5e-26 >seq7203 Length=1522 Score = 154 bits (170), Expect = 2e-32 Identities = 569/878 (65%), Gaps = 39/878 (4%) Strand=Plus/Plus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 ||||||| | ||||||| |||| || |||||||||||||| || ||||| || | ||| Sbjct 664 AACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAA 723 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 || || | ||||| ||||| || ||||| || || | | || ||| || | Sbjct 724 CGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAA 783 Query 16021 T---TCCGTAACTAATCT-ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAAT 16076 | ||| || || | ||| || ||||| || || ||||| ||||||| ||| || Sbjct 784 TGATTCC--AA--AAGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCAT 839 Query 16077 TAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCG 16136 | || || || | || || || || | |||| |||| || ||| || | || | Sbjct 840 TCATGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTG 899 Query 16137 CTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTG-TA--TGGTTTAGGTGTT--- 16190 | ||||| | | |||| | | |||| || ||| || || | | ||| Sbjct 900 CATCTTTCACTAAATCG-----TAGATTTTCTGAGGGTCATACTTGTTCTGAATGTAATT 954 Query 16191 --TAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTT 16248 || | | | ||| || ||||| | |||| ||||| || | || | || || Sbjct 955 AGTATATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATT 1014 Query 16249 GGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATG 16307 || || || | || |||||| || ||||| || ||||||||||||| |||| |||| Sbjct 1015 AGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATG 1073 Query 16308 ACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG 16367 | || || ||||| ||||| || ||| ||||| || | | || || | || Sbjct 1074 AGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAA-GTTT 1132 Query 16368 CATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCG 16427 | | |||| | ||||| | |||| |||||||||| |||| ||| || Sbjct 1133 C--CGTTATCA---ATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATAT 1187 Query 16428 TTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCA 16487 |||||||| |||| || ||| ||| || | || | ||||| | |||||||| Sbjct 1188 GGTCTATGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCA 1247 Query 16488 GTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATC 16547 | | ||| ||||||| || ||||| || || ||||| || |||||||| ||| Sbjct 1248 GAAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATT 1307 Query 16548 GAGCCTCCGCTATTTGTACTTCCACG-----TAAAATCGTTCCGCCAGGTTCTCATTCAC 16602 || || || | |||||| ||| |||||| | | |||| ||| ||||| || Sbjct 1308 TTGCTTCGGCAAATTGTAC----ACGAGAGATAAAATTGA-CTGCCAAGTTTTCATTAAC 1362 Query 16603 GATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGA 16662 |||||| ||| ||||||||||||||||||| || ||| |||| || || Sbjct 1363 GATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATC 1422 Query 16663 TGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722 | || | | ||| ||||| ||||| |||| || | |||||| | ||||| || Sbjct 1423 GCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAA 1482 Query 16723 GCTAGCCACTGCCTTTTTATACATTTTCCAAATATCAT 16760 |||| | |||||||| | || ||| ||||||| Sbjct 1483 TGAAGCCTCATGTTTTTTATAAAATTGCCAGATATCAT 1520 >seq4369 Length=2652 Score = 134 bits (148), Expect = 1e-26 Identities = 381/581 (66%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || || ||||||| |||||||| | || | ||| || || ||||| || ||| Sbjct 2617 GCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCT 2558 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324 |||||| || ||||| || ||||| | || | | || | || || |||||||| Sbjct 2557 GGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATC 2498 Query 16325 CCCTCAACAG--ATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAA 16382 ||||| || | ||| || || || | || || || | ||| | |||| | Sbjct 2497 CCCTCCACCGCCATG--AAGGCAATGAGACGCTCAGCAAATGTACCCTCTTCT------A 2446 Query 16383 TCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAA 16442 |||| ||| || |||||| ||||| | || || || |||| | | || Sbjct 2445 TCCACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAA 2386 Query 16443 ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502 | || || | ||||| ||| | ||||| |||||||||| | | ||| | | Sbjct 2385 ATAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCT 2326 Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562 | | |||||||| || || |||||||||||||||| || || ||||||| | | Sbjct 2325 CAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCT 2266 Query 16563 GTACTTCCA-CGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 | || || | |||||| | || ||||||||||| || || || || || ||| Sbjct 2265 GCACCTCTTTCATAAAATTCA-CAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCA 2207 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCT 16681 || |||||||| || ||| |||||||| | |||| ||| | || | | |||||| Sbjct 2206 AAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCC 2147 Query 16682 TTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTA 16741 || || | ||| | ||| | |||||| | ||||||||| || | || |||||| Sbjct 2146 GCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTA 2087 Query 16742 TACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 |||| | ||| ||||||| | | |||||| ||| ||| Sbjct 2086 TACAACTGCCATATATCATCATGCTTGATGGGATATAGGAC 2046 >seq2192 Length=7014 Score = 132 bits (146), Expect = 5e-26 Identities = 193/270 (71%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || || ||||| ||||| ||||| ||| ||||| ||||| | ||| Sbjct 6454 TTCATGTAGCGGATTTTTCCGAATACATCCCGCTCAAACCAAGCTCTATCGTGCACGCCT 6513 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055 ||| | |||| | ||||| ||||| |||||||| || |||| |||||| ||| Sbjct 6514 CCTATAGACCATGCTAAGCCCACATATCCATTGGGATCCCGACCATCTAGCTCGTATTTA 6573 Query 119056 TCGTTTAAGTAGATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtt 119115 || || | || || | || || | || |||||||| || ||||||||| | | Sbjct 6574 TCATTGAGATATATCCCGATGCGAAGGGCGACCTCCGGAGTTTTGGTCCATTCCAAAAGT 6633 Query 119116 tttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCG-TTAATCATCTGAAG 119174 || || |||||||||||||||| ||| || ||||| || ||||| || | ||||| || Sbjct 6634 TTCTTCGCCCAGTACATACGTATATAGCCATGCATCTT-GCCTCGTTTTACCATCTCCAG 6692 Query 119175 TTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204 || | || ||||| |||||||| || || Sbjct 6693 CTGAGTGGCATTCCACAGAGGATCATGCGT 6722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511337138069520