Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq6992 152 1e-32 seq6336 89.7 1e-13 >seq6992 Length=1569 Score = 152 bits (168), Expect = 1e-32 Identities = 614/947 (65%), Gaps = 54/947 (6%) Strand=Plus/Minus Query 14804 GCACTCGGTCTGCGTGCCTACATCGAC-CAGACTATCGGCTGGCACAAAACGCTGTCTAA 14862 || ||||| ||||||||| | |||||| | || | ||||||||||| | ||||| || Sbjct 1521 GCGCTCGGCCTGCGTGCCAAGATCGACACCGAACAG-GGCTGGCACAAGAGCCTGTCCAA 1463 Query 14863 CGTTGGCGTGCAGGGCGTTACCGGCATCAGCGCCTCAGTCTTTTGGGATTTGCAGGCATC 14922 ||| |||| ||||| ||||||||| | || ||||||| |||||| ||| Sbjct 1462 CGTGCCCGTGGCTGGCGTCACCGGCATCTCCAAGGATGTGCATTGGGATCTGCAGG-ATC 1404 Query 14923 CGGC-ACAGATGCTGACCTGCTCAACGAGGCCGGAGTCACCACGCTGGTG-CG--CAAGG 14978 |||| || ||||| | | | |||||||||| || |||||||||||||| || || Sbjct 1403 CGGCCACCGATGCCGGCATCCTCAACGAGGGCGACATCACCACGCTGGTGACGTTCA--- 1347 Query 14979 ATGGTTTCCGTTTTTGGGGGAACCGCACATGCTCTGATGACCCGCTTTTCCTGTTTGAGA 15038 | || || || ||||| ||||| ||| | || ||| | ||| || |||| Sbjct 1346 ACGGCCAGCGCTTCTGGGGATCGCGCACGTGCGCGGAGGACAACATGTTCGCCTTCGAGA 1287 Query 15039 ACTACACCCGAACCGCGCAGGTGCTGGCCGACACAATGGCTG-AGGCGCACATGTGGGCG 15097 ||| || ||||||||| | ||||||||||| || || | ||||| || Sbjct 1286 CGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATCGCCGAAGGCG-TGGCGTTCTAC 1228 Query 15098 GTCGATAAGCCCAT-CACCGCATCGCTCATCCGTGACATTGTCGACGGCATTAACGCCAA 15156 ||||| || || || |||| | ||||| || | || | |||| || |||||||| Sbjct 1227 GTCGACAAACCGATGCACC-CCTCGCTGGTCAGGGATCTGATCGAAACGATCAACGCCAA 1169 Query 15157 ATTCCGCGAGCTGAAATCAAATGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGA 15216 |||||||| ||||| || |||||| | | || | | ||||| |||| || Sbjct 1168 GTTCCGCGACCTGAAGTCGTCGGGCTACTTGATCGATGCCAACGCCTGGTACGAC--GGC 1111 Query 15217 ATCGAACGATAAGGAAACC---CTCAAGGCCGGGAAACTGTATATCGACTACGACTATAC 15273 || | | | | | ||| ||| | || ||| ||||| |||||||| || Sbjct 1110 AT-GGTCAACAGCGCCACCACGCTCGCCGATGGCGCGCTGCGCATCGATTACGACTACAC 1052 Query 15274 ACCGGTTCCCCCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGATAAATATCTGGT 15333 ||||| || || ||||| | | || ||| | || |||||| | || |||| Sbjct 1051 GCCGGTGCCACCGCTGGAGAACTTGCAGCTGTACAAGAAGATCACCACCAGCTACCTGGC 992 Query 15334 GAATCTGGCTGAATCGGTCAACAGCTAAGG----AGCCTGA-----------AACAACAT 15378 | | || ||| |||||| ||| | |||| | ||| ||| Sbjct 991 CGACTTCGCCGAACGCGTCAACGCGTAACGCACCCGCCTCAGATTCCCGGAGAACCCCAT 932 Query 15379 GGCACTACCCCGCAAACTTAAATATCTGAACATGTTCAATGACGGCCTTAGCTACATGGG 15438 ||| | ||| ||||| ||| || ||| ||||||| ||||| ||||| | || Sbjct 931 GGCTTTGCCCAAGAAACTCAAAGCGCTCAACCTGTTCAACGACGGTGAGAGCTATCTCGG 872 Query 15439 C---GTTGTTGAATCCGTGACGCTGCCGAAGCTGACCCGCAAGCTCGAAAACTATCGCGG 15495 | || || ||| |||| |||||| | |||| |||||||| | || | |||||||| Sbjct 871 CCAGGTGGTCGAA---GTGAAGCTGCCCACGCTGTCCCGCAAGATGGAGGAGTATCGCGG 815 Query 15496 CGGCGGTATGAATGGCGCTGCAGCGATTGACCTCGGCCTCGACGATGAT-GCGCTTACTG 15554 |||||||||||||||| | | | || ||| |||||| || || ||| | || Sbjct 814 CGGCGGTATGAATGGCCCGGTCGACATCGACTTCGGCCAGGA-GAAGATCGAGC------ 762 Query 15555 TCGAATGGTCTGTCGGTGGCCTGCCTGATGTGGCGC-TGTGGGCGCAGTATGCCGCGCCG 15613 |||||||| ||| | |||||||| | || | | ||||| | ||| | Sbjct 761 TCGAATGGAAGTGCGG----CGGCCTGATGCGCAGCGTACTGAATCAGTACGGCGCCACC 706 Query 15614 GGGGCTGATGCCGTGCCGCTGCGTTTTGCTGGCTCTTACCAGCGTGACGACACTGGCGAA 15673 | | ||||||| |||||| ||||| ||| | |||||||| ||||| | ||| Sbjct 705 ACGCACAACGCCGTGCAGCTGCGCTTTGCCGGCGCCTACCAGCGCGACGATTCCACCGAG 646 Query 15674 ATCGTTGCGGTCGAGGTGGTCATGCGTGGCCGTCATAAAGAAATCGA 15720 | | |||||| || | || |||| |||||||| || || || || Sbjct 645 GTGGATGCGGTGGAAATTGTTGTGCGCGGCCGTCACAAGGAGATTGA 599 >seq6336 Length=1727 Score = 89.7 bits (98), Expect = 1e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 4141 GGCGTTGTTCGCTAAAATCACCCCGACCGATGACCTTATCGCGATGAATAAAGCCGCGCA 4200 |||| |||| || | ||| ||||||| ||||| ||| | || || || || ||| Sbjct 371 GGCGCTGTTTGCCCAGATCGAGCCGACCGCCGACCTGATCACCATCAACAAGTCCAAGCA 312 Query 4201 GAAGGTCTACACCTCAATGGAAATTCAGCCGAATTTTGCCAATACCGGCAAATGCTACCT 4260 |||| |||||||| || || | ||| ||| || ||||| |||||||| || || Sbjct 311 GAAGCTCTACACCAGCATCGAGGTGCAGGAGAAATTCGCCAACACCGGCAAGGCGTATCT 252 Query 4261 CGTCGGCCTTGCTGTCACCGATGACCCGGCGAGCCTCGGCAC 4302 ||||||||| || |||||||| ||||| ||||| ||||| Sbjct 251 CGTCGGCCTGGCGGTCACCGACTCGCCGGCCAGCCTGGGCAC 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97861152828952