Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7203 280 2e-70 seq75 149 7e-31 seq4369 141 1e-28 seq732 140 4e-28 >seq7203 Length=1522 Score = 280 bits (310), Expect = 2e-70 Identities = 631/928 (68%), Gaps = 30/928 (3%) Strand=Plus/Plus Query 23779 TTATGTTTCTTTAAAAGTCAACATCTAA--AGAAAAATGATTG-TCTTCTTGAGACATAA 23835 || ||| |||| |||| || |||| | ||||| | ||| |||| |||||||||| Sbjct 607 TTTTGTATCTT-AAAATTCTTCATCGAGCGAGAAAGACATTTGCTCTTTCTGAGACATAA 665 Query 23836 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 23895 | ||| ||||||||||||||| |||||||||||||| ||||| ||||| |||| ||| | Sbjct 666 CACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACG 725 Query 23896 ATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAAT- 23954 | || | |||||||||||| | |||||||| ||||||| ||| | |||| ||| ||| Sbjct 726 AAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATG 785 Query 23955 -TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCAT 24013 | ||| | ||| || |||||||| || ||| ||| | ||| |||||| Sbjct 786 ATTCCAAA--AGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCAT 843 Query 24014 TCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 24073 || || | ||| || || || |||| | ||||||| ||| || || || || Sbjct 844 GCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATC 903 Query 24074 TGTTA-TAA----TAGATCTTACT--GTTTCTTCACTCG--GTGGATACAATAAATGTTT 24124 | | | ||| ||||| || || | || | ||| | || || ||| | | | | Sbjct 904 TTTCACTAAATCGTAGAT-TTTCTGAGGGTCAT-ACTTGTTCTGAATGTAATTAGTATAT 961 Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184 || |||||| || || || | ||||| || || || | | |||||| || || || Sbjct 962 AA----CAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGA 1017 Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATC 24243 || || || || ||||||| ||||| ||||| | ||| ||||| || ||| ||||| | Sbjct 1018 GAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGA-GCAGAATGAGC 1076 Query 24244 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC 24303 | || |||||||| |||||||| | ||||| || | || | || |||| | | Sbjct 1077 CTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGC--GGTCAATAA-AGTTTC 1133 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || || ||||| |||||||||||| || || |||||||| || || |||| Sbjct 1134 CGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTA 1193 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | ||||||| | | | | ||| | ||||| | ||| | |||||||| ||| Sbjct 1194 TGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCAGAAGCG 1253 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 || |||| |||||||||||||| || || || || || ||||||||| | || | Sbjct 1254 AGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCTT 1313 Query 24484 CGGTAATCTGTAC-TTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 ||| || ||||| | | ||||| | |||| || |||||||| || || || ||| Sbjct 1314 CGGCAAATTGTACACGAGAGATAAAATTG-ACTGCCAAGTTTTCATTAACGATACCATCA 1372 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 || |||||||||||||||||||| ||||||| || | | || | Sbjct 1373 GAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGCTT 1432 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| || || | ||| |||| || | |||||| ||||||| ||||| ||||| Sbjct 1433 TCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCTCA 1492 Query 24663 GCCTTTTTATACATATTCCAGATGTCAT 24690 |||||||| | | |||||| |||| Sbjct 1493 TGTTTTTTATAAAATTGCCAGATATCAT 1520 >seq75 Length=61118 Score = 149 bits (164), Expect = 7e-31 Identities = 761/1205 (63%), Gaps = 10/1205 (1%) Strand=Plus/Plus Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 |||| || || || |||||||| |||||||| || || | |||| | ||| ||||| | Sbjct 21100 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21159 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 || || | |||||||||||| || || | || || |||||||| |||| || | | Sbjct 21160 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21219 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | | | || || | |||||||| || || || ||||| | || || | || | Sbjct 21220 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21279 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 | ||||| | | || || ||| || | ||| || ||| ||| || | Sbjct 21280 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21339 Query 53685 CTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 || |||||| || || || | || |||| |||||| || || || |||| | Sbjct 21340 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21399 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 || | | || | ||| ||| | ||||| || ||| || || | || || | Sbjct 21400 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21459 Query 53805 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATC 53863 | || | ||| | | ||| ||||||||||| || || || ||| || ||||||||| Sbjct 21460 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21518 Query 53864 TGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTT 53923 || | || | ||||| ||| | | || || || | || | | | | Sbjct 21519 TGCGCATCCAAGATCGCAAACCACAGCTGCTGGGCATTGATCGTC--TTCCTCGCCCGTC 21576 Query 53924 TCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 ||||| ||||| | |||||| ||||||||||| ||||| | || || | Sbjct 21577 CCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGCC 21636 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 | ||| ||||| ||||| | ||| ||||| || | | | ||| |||||||| | Sbjct 21637 CTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGA 21696 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 | ||||| || | ||| | || | || | || | | | ||| || || || Sbjct 21697 ATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCAT 21756 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 ||| || | |||||| ||| | | | || | ||||||||||||||||| || | Sbjct 21757 GATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCG 21816 Query 54162 TCATAAC--TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 || ||| ||| |||||| || || ||||| | ||||| || |||| |||| | Sbjct 21817 -CA-AACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21874 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 || | | ||| || ||||| || || || | ||||| || || || ||||| Sbjct 21875 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAGCTATT 21934 Query 54280 ACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 |||| || ||||| || | || ||||| |||||| ||| || || | || Sbjct 21935 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 21994 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| |||| || ||||||||||| || || || |||||| |||| | || ||| Sbjct 21995 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAA 22054 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 || ||||| |||| | ||| || || |||||||| | || || | || || || Sbjct 22055 GCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT 22114 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519 ||| | || | || | || | || || || | || | | || ||| || ||| Sbjct 22115 AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATG 22174 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 || || | ||||| || | | ||| || || || | ||| |||| || ||| | Sbjct 22175 GATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGAC 22234 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 | ||| || | ||| | |||||||| |||||||||| ||| || || || Sbjct 22235 CCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCG 22294 Query 54640 TTCGT 54644 |||| Sbjct 22295 GTCGT 22299 >seq4369 Length=2652 Score = 141 bits (156), Expect = 1e-28 Identities = 391/594 (66%), Gaps = 9/594 (2%) Strand=Plus/Minus Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196 ||| ||||| || |||| || ||||| | | ||| ||||| || || || || | || Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256 ||||||| ||||| ||||| | |||| | || || || | || || ||||| || Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCA 24316 || || || ||| |||||||| || | || || | | | || | |||||| Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAAT---GTACCCTCTTCTATCCA 2442 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 ||| | ||||| | || ||||| | || || || |||| || | ||| | Sbjct 2441 CTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAA 2382 Query 24377 ATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 24434 | | ||||| ||| ||| |||| ||||||||||||||| ||| || | || Sbjct 2381 CTTGGCCTTTTC--TACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCA 2324 Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 24494 | ||| |||||||| || || |||||||| |||| ||| | ||||| | | ||| Sbjct 2323 GCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGC 2264 Query 24495 ACTTCTAT-ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 || ||| | | ||||| | |||| || ||||| ||||| || || || ||||| Sbjct 2263 ACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAA 2205 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 24613 |||||||| | ||| || |||| | |||| || |||| | |||||||| Sbjct 2204 GAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGC 2145 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 | || | || | ||| | |||||| | |||||||| || || || || |||||||| Sbjct 2144 AAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATA 2085 Query 24674 CATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || | ||| || |||| || | || ||| | | ||||| | || ||||| Sbjct 2084 CAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAACCGATCCGGATT 2031 >seq732 Length=22061 Score = 140 bits (154), Expect = 4e-28 Identities = 390/591 (66%), Gaps = 13/591 (2%) Strand=Plus/Plus Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215 ||||| |||| |||||| | ||||| || || |||| || ||||| || || ||||| Sbjct 8984 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 9043 Query 24216 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 24274 || |||||||| || || ||| || || || || |||||||| ||||| || | ||||| Sbjct 9044 TTCAGCCAAAAGATCGA-GCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAA 9102 Query 24275 GGCAATAAGTCTTTCTCCATAACCGGCGCTG-TCATGTATC----CACTTTTGAGCCCAA 24329 || | || | || | || || | | | || || ||||| | |||||| Sbjct 9103 TGCCAGCAGCCGCTCCGCGTA--CGAAGATACTTGTGGGTCGCACCACTTGAGCGCCCAA 9160 Query 24330 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 24389 | ||| |||||| ||||| || || ||||| || || | || | | || || Sbjct 9161 TTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTCC 9220 Query 24390 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 24449 | ||||||| || || ||||| | || ||| | |||||| || ||||||||| Sbjct 9221 GTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCA 9280 Query 24450 ATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAAT 24509 || || || || || || || || || | ||| || | | || ||||| | | ||| Sbjct 9281 ATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAA- 9339 Query 24510 CGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567 |||| || | ||| || ||||| || || |||||||||||||| || || | |||| Sbjct 9340 -GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACAT 9398 Query 24568 GTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627 | || ||||| | || | || || || ||| || |||| ||| | | Sbjct 9399 GCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCA 9458 Query 24628 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT 24687 || | || || | ||||| || || || || ||||| || ||||| | ||| | || Sbjct 9459 AGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACACGT 9518 Query 24688 CATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 24738 | || | ||| || ||||| | ||||| | || || || || |||||| Sbjct 9519 CGTGCTCTTGGATCGGAAAGAGCACAAAGCGGTTGGGGTTCTTCACAAGGA 9569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593631903509280