Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq6992 140 7e-29 seq6336 107 4e-19 >seq6992 Length=1569 Score = 140 bits (154), Expect = 7e-29 Identities = 230/324 (71%), Gaps = 11/324 (3%) Strand=Plus/Minus Query 18246 ACCAGTACCACCGCCACCGCGTATGCCACCGCCCGTGCGCTGGGGCTGCGCGCTAAAATC 18305 ||||| ||||| | | || |||||||| || |||||||| || ||||| || || ||| Sbjct 1557 ACCAGCACCACGACGGCGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATC 1498 Query 18306 GACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAATGTCGGGGTGAACGGTGTTACCGGC 18365 ||| || ||||||||||| || | |||||||| || ||| || || |||||| Sbjct 1497 GACACCGAACAGGGCTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGC 1438 Query 18366 ATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGTCCGG-CACCGATGCTGACCTGCTT 18422 ||| | | || || || |||||| ||||||| ||||| ||||||||| | | | || Sbjct 1437 ATCTCCAAGGATGTGCAT--TGGGATCTGCAGGA-TCCGGCCACCGATGCCGGCATCCTC 1381 Query 18423 AACGAGTCAGGCGTCACTACGCTGATTCGCCG--CGACGGTTTCCGCTTCTGGGGTAACC 18480 |||||| | | |||| |||||| | | || | |||| ||||||||||| | Sbjct 1380 AACGAGGGCGACATCACCACGCTGGT--GACGTTCAACGGCCAGCGCTTCTGGGGATCGC 1323 Query 18481 GTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTCG 18540 | || ||| | || ||| ||||| ||| || | ||| |||||||||||| || Sbjct 1322 GCACGTGCGCGGAGGACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCC 1263 Query 18541 TGGCCGACACGATGGCTG-AGGCG 18563 |||||||||| || || | ||||| Sbjct 1262 TGGCCGACACCATCGCCGAAGGCG 1239 >seq6336 Length=1727 Score = 107 bits (118), Expect = 4e-19 Identities = 164/228 (72%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 3347 TATGGCGATGTGGCCGAACTGAAGGCCGAAAAGATTGACGAT-GATTCGGCGCTGAAAGG 3405 ||||||||||| | | | |||| |||||| || | || ||| ||| ||| | || | Sbjct 430 TATGGCGATGTCACTGCAGTGAAAGCCGAAGAGGTCGA-GATCGAT--GGCAC-CAAGCG 375 Query 3406 CAAATGGGCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGC 3465 | |||||||||||| | ||| ||||||| ||||| ||| | || |||||| | Sbjct 374 C---CTGGCGCTGTTTGCCCAGATCGAGCCGACCGCCGACCTGATCACCATCAACAAGTC 318 Query 3466 CGCGCAGAAGGTCTACACCTCAATGGAAATTCAGCCGAACTTTGCCAACACCGGCAAATG 3525 | ||||||| |||||||| || || | ||| ||| || |||||||||||||| Sbjct 317 CAAGCAGAAGCTCTACACCAGCATCGAGGTGCAGGAGAAATTCGCCAACACCGGCAAGGC 258 Query 3526 TTATCTGGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCAC 3573 ||||| || || ||||| |||||||| ||||| ||||| ||||| Sbjct 257 GTATCTCGTCGGCCTGGCGGTCACCGACTCGCCGGCCAGCCTGGGCAC 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107360589262260