Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_001895.1
Length=33593
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 140 7e-29
seq6336 107 4e-19
>seq6992
Length=1569
Score = 140 bits (154), Expect = 7e-29
Identities = 230/324 (71%), Gaps = 11/324 (3%)
Strand=Plus/Minus
Query 18246 ACCAGTACCACCGCCACCGCGTATGCCACCGCCCGTGCGCTGGGGCTGCGCGCTAAAATC 18305
||||| ||||| | | || |||||||| || |||||||| || ||||| || || |||
Sbjct 1557 ACCAGCACCACGACGGCGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATC 1498
Query 18306 GACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAATGTCGGGGTGAACGGTGTTACCGGC 18365
||| || ||||||||||| || | |||||||| || ||| || || ||||||
Sbjct 1497 GACACCGAACAGGGCTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGC 1438
Query 18366 ATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGTCCGG-CACCGATGCTGACCTGCTT 18422
||| | | || || || |||||| ||||||| ||||| ||||||||| | | | ||
Sbjct 1437 ATCTCCAAGGATGTGCAT--TGGGATCTGCAGGA-TCCGGCCACCGATGCCGGCATCCTC 1381
Query 18423 AACGAGTCAGGCGTCACTACGCTGATTCGCCG--CGACGGTTTCCGCTTCTGGGGTAACC 18480
|||||| | | |||| |||||| | | || | |||| ||||||||||| |
Sbjct 1380 AACGAGGGCGACATCACCACGCTGGT--GACGTTCAACGGCCAGCGCTTCTGGGGATCGC 1323
Query 18481 GTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTCG 18540
| || ||| | || ||| ||||| ||| || | ||| |||||||||||| ||
Sbjct 1322 GCACGTGCGCGGAGGACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCC 1263
Query 18541 TGGCCGACACGATGGCTG-AGGCG 18563
|||||||||| || || | |||||
Sbjct 1262 TGGCCGACACCATCGCCGAAGGCG 1239
>seq6336
Length=1727
Score = 107 bits (118), Expect = 4e-19
Identities = 164/228 (72%), Gaps = 8/228 (4%)
Strand=Plus/Minus
Query 3347 TATGGCGATGTGGCCGAACTGAAGGCCGAAAAGATTGACGAT-GATTCGGCGCTGAAAGG 3405
||||||||||| | | | |||| |||||| || | || ||| ||| ||| | || |
Sbjct 430 TATGGCGATGTCACTGCAGTGAAAGCCGAAGAGGTCGA-GATCGAT--GGCAC-CAAGCG 375
Query 3406 CAAATGGGCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGC 3465
| |||||||||||| | ||| ||||||| ||||| ||| | || |||||| |
Sbjct 374 C---CTGGCGCTGTTTGCCCAGATCGAGCCGACCGCCGACCTGATCACCATCAACAAGTC 318
Query 3466 CGCGCAGAAGGTCTACACCTCAATGGAAATTCAGCCGAACTTTGCCAACACCGGCAAATG 3525
| ||||||| |||||||| || || | ||| ||| || ||||||||||||||
Sbjct 317 CAAGCAGAAGCTCTACACCAGCATCGAGGTGCAGGAGAAATTCGCCAACACCGGCAAGGC 258
Query 3526 TTATCTGGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCAC 3573
||||| || || ||||| |||||||| ||||| ||||| |||||
Sbjct 257 GTATCTCGTCGGCCTGGCGGTCACCGACTCGCCGGCCAGCCTGGGCAC 210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 107360589262260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |