Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq732 260 1e-64 seq151 132 5e-26 seq1324 100 3e-16 seq373 89.7 5e-13 >seq732 Length=22061 Score = 260 bits (288), Expect = 1e-64 Identities = 428/606 (71%), Gaps = 16/606 (3%) Strand=Plus/Minus Query 116592 AGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACA 116651 |||||||| ||| || ||| | || || || ||| | | ||| |||||| ||||||| Sbjct 9560 AGAACCCCAACCGCTTTGTGCTCTTTCCGATCCAAGAGCACGACGTGTGGCAGATGTACA 9501 Query 116652 AAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAGC 116710 | ||||| || || ||||||||||| | |||||| | ||| || | || | | | || Sbjct 9500 AGAAGGCGGAAGCTTCGTTCTGGACTGCTGAGGAGCTAGACTTGGTGCACGATCTCAAG- 9442 Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 ||||||| | | | | ||||| ||||| || || |||||||| ||||| ||||| || Sbjct 9441 GACTGGGCGAACCTCACGGACAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTT 9382 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTGC 116828 || ||||| || ||||| || ||||||||||||| | || | ||| || | || |||| Sbjct 9381 GCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAAC-TTTAGC-AATGAAGTGC 9324 Query 116829 AGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGG 116888 | ||| | || || |||||||| || ||||| |||||||| || || ||| | ||||||| Sbjct 9323 AAGTGCCGGAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATTGAAAACATCCACTCGG 9264 Query 116889 AAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || | |||||| ||||| ||||||||| | | | | ||||| || | | || Sbjct 9263 AAGTCTATTCGCTGCTCATTGACACGTACATTAAAGAG-GCGACGGAGAAGGATCACC-- 9207 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 | || ||| || ||||| || ||||| || | |||| ||| | |||||||| Sbjct 9206 -TTCTGCGCGCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAG 9148 Query 117005 TGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||| || || || || | | | || ||||| ||| |||| || || | ||||| Sbjct 9147 TGGTGCGACCCACA-AGTATCTTCGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGA 9089 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| | ||||| |||||| ||| | | || |||||||| ||||| ||||| ||||| Sbjct 9088 AGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGAAGCGCGGTCTCAT 9029 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 ||| ||||| | ||| ||||||||||| | || ||||| |||| ||||| Sbjct 9028 GCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTT 8969 Query 117184 TGCCTG 117189 ||| || Sbjct 8968 TGCGTG 8963 >seq151 Length=51439 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||| | || || || || ||||| | ||||| || | Sbjct 38503 AAGATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCG 38444 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | || || | | ||| | || || | ||||| ||||||||||| | || Sbjct 38443 TCTGACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGA 38385 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| || ||||| |||||||| |||| ||||| || | |||||| Sbjct 38384 CCAGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTA 38325 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| | ||| || | || ||| Sbjct 38324 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38273 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || || || || || | ||||| || | | Sbjct 38272 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATTACGCTGGACGTGGAGCCGTCT 38213 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | ||| | || || | ||||| ||||||||||| | ||||| Sbjct 38212 GACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 38154 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| |||| || || || | |||||||| Sbjct 38153 GCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGTGACTACAA 38094 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| | ||| || | || ||| Sbjct 38093 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38045 >seq1324 Length=13147 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||| | || ||||| || ||||| | ||||| || | || Sbjct 2293 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2234 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | | ||| | || |||| || || || ||||| || | |||||| Sbjct 2233 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2174 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| || ||||| |||| ||||| ||| ||||||||| Sbjct 2173 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGTCGCACGCTCTCGGACTACAAC 2114 Query 40870 ATCCAGAAGG 40879 ||||| |||| Sbjct 2113 ATCCAAAAGG 2104 >seq373 Length=42858 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || ||||||| ||| ||||| ||||| || || | || || || ||| Sbjct 34313 GACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGTCGTACTCTGTCGGAC 34254 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||||| | |||||||| || ||| | || || | ||||| ||| Sbjct 34253 TACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGTCTGCGTGGCGGTGGC 34197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515141363259360