Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq732 260 1e-64
seq151 132 5e-26
seq1324 100 3e-16
seq373 89.7 5e-13
>seq732
Length=22061
Score = 260 bits (288), Expect = 1e-64
Identities = 428/606 (71%), Gaps = 16/606 (3%)
Strand=Plus/Minus
Query 116592 AGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACA 116651
|||||||| ||| || ||| | || || || ||| | | ||| |||||| |||||||
Sbjct 9560 AGAACCCCAACCGCTTTGTGCTCTTTCCGATCCAAGAGCACGACGTGTGGCAGATGTACA 9501
Query 116652 AAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAGC 116710
| ||||| || || ||||||||||| | |||||| | ||| || | || | | | ||
Sbjct 9500 AGAAGGCGGAAGCTTCGTTCTGGACTGCTGAGGAGCTAGACTTGGTGCACGATCTCAAG- 9442
Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770
||||||| | | | | ||||| ||||| || || |||||||| ||||| ||||| ||
Sbjct 9441 GACTGGGCGAACCTCACGGACAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTT 9382
Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTGC 116828
|| ||||| || ||||| || ||||||||||||| | || | ||| || | || ||||
Sbjct 9381 GCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAAC-TTTAGC-AATGAAGTGC 9324
Query 116829 AGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGG 116888
| ||| | || || |||||||| || ||||| |||||||| || || ||| | |||||||
Sbjct 9323 AAGTGCCGGAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATTGAAAACATCCACTCGG 9264
Query 116889 AAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAGCTCCGT 116944
|| | |||||| ||||| ||||||||| | | | | ||||| || | | ||
Sbjct 9263 AAGTCTATTCGCTGCTCATTGACACGTACATTAAAGAG-GCGACGGAGAAGGATCACC-- 9207
Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004
| || ||| || ||||| || ||||| || | |||| ||| | ||||||||
Sbjct 9206 -TTCTGCGCGCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAG 9148
Query 117005 TGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063
||| || || || || | | | || ||||| ||| |||| || || | |||||
Sbjct 9147 TGGTGCGACCCACA-AGTATCTTCGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGA 9089
Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123
||| | ||||| |||||| ||| | | || |||||||| ||||| ||||| |||||
Sbjct 9088 AGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGAAGCGCGGTCTCAT 9029
Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183
||| ||||| | ||| ||||||||||| | || ||||| |||| |||||
Sbjct 9028 GCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTT 8969
Query 117184 TGCCTG 117189
||| ||
Sbjct 8968 TGCGTG 8963
>seq151
Length=51439
Score = 132 bits (146), Expect = 5e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || ||| | || || || || ||||| | ||||| || |
Sbjct 38503 AAGATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCG 38444
Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| ||| | || || | | ||| | || || | ||||| ||||||||||| | ||
Sbjct 38443 TCTGACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGA 38385
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| || || |||| || ||||| |||||||| |||| ||||| || | ||||||
Sbjct 38384 CCAGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTA 38325
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||||||| | |||||||| || ||| | ||| || | || |||
Sbjct 38324 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38273
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||| | || || || || || || | ||||| || | |
Sbjct 38272 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATTACGCTGGACGTGGAGCCGTCT 38213
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | || || | | ||| | || || | ||||| ||||||||||| | |||||
Sbjct 38212 GACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 38154
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || ||||| |||||||| |||| || || || | ||||||||
Sbjct 38153 GCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGTGACTACAA 38094
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| | |||||||| || ||| | ||| || | || |||
Sbjct 38093 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38045
>seq1324
Length=13147
Score = 100 bits (110), Expect = 3e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || ||| | || ||||| || ||||| | ||||| || | ||
Sbjct 2293 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2234
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||||| | | | | ||| | || |||| || || || ||||| || | ||||||
Sbjct 2233 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2174
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || ||||| || ||||| |||| ||||| ||| |||||||||
Sbjct 2173 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGTCGCACGCTCTCGGACTACAAC 2114
Query 40870 ATCCAGAAGG 40879
||||| ||||
Sbjct 2113 ATCCAAAAGG 2104
>seq373
Length=42858
Score = 89.7 bits (98), Expect = 5e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863
|||||||| || ||||||| ||| ||||| ||||| || || | || || || |||
Sbjct 34313 GACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGTCGTACTCTGTCGGAC 34254
Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
|||||||||||||||||| | |||||||| || ||| | || || | ||||| |||
Sbjct 34253 TACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGTCTGCGTGGCGGTGGC 34197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515141363259360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |