Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq75 132 4e-26 seq151 95.1 1e-14 >seq75 Length=61118 Score = 132 bits (146), Expect = 4e-26 Identities = 325/491 (66%), Gaps = 4/491 (1%) Strand=Plus/Plus Query 132918 CGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGAC 132977 |||| |||||||| ||||| || || |||| ||||||||||||||| || || | Sbjct 20490 CGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGACGTC 20549 Query 132978 ACC--ACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGA 133035 | | || || || || || || | | | ||| ||||| || ||||| ||| Sbjct 20550 AGCTTACTGATC--GTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGCAAATGT 20607 Query 133036 AAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCT 133095 | | |||| || || | | | | || |||| || || ||||| | |||| Sbjct 20608 ACGCGCCACGATCAGCCGAGAGATCCAAGATCGACTTCTGCTTAATTTCCCACACTGTCT 20667 Query 133096 TGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGG 133155 || | | |||||||| | || || | || || |||||||| || ||| Sbjct 20668 TGTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCACCGTCGT 20727 Query 133156 CCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGA 133215 || ||| | |||||| | ||| || || | ||| | || || || | | || | | Sbjct 20728 TCAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCA 20787 Query 133216 GATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACG 133275 | |||| ||| || | ||||||||| || || ||||| | | || | |||||||| Sbjct 20788 GGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACG 20847 Query 133276 TGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGT 133335 || |||| || | || ||||||||||| || ||||| ||||||| ||||| ||||| Sbjct 20848 TGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTG 20907 Query 133336 ACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCC 133395 |||||| | || |||||| | | ||| |||||| | | ||| || ||| || ||| Sbjct 20908 GCGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTCTCCTTCAACTCCGTCC 20967 Query 133396 AGTCCCACAGA 133406 ||||||| ||| Sbjct 20968 AGTCCCAAAGA 20978 >seq151 Length=51439 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| ||||||| ||||| || || Sbjct 38291 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 38350 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 38351 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38410 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | ||| | ||| || || | || | ||| || Sbjct 38411 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38470 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || ||||||||||| Sbjct 38471 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || |||| || || || || Sbjct 38063 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGGCCGTCTTC 38122 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 38123 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38182 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | ||| | ||| || || | || | ||| || Sbjct 38183 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTAATCGTCTT 38242 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || || |||||||||||| Sbjct 38243 CCCTGTCAACGTCTTCACGAAAATCTGCATG 38273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433766497595512