Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq75 132 4e-26
seq151 95.1 1e-14
>seq75
Length=61118
Score = 132 bits (146), Expect = 4e-26
Identities = 325/491 (66%), Gaps = 4/491 (1%)
Strand=Plus/Plus
Query 132918 CGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGAC 132977
|||| |||||||| ||||| || || |||| ||||||||||||||| || || |
Sbjct 20490 CGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGACGTC 20549
Query 132978 ACC--ACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGA 133035
| | || || || || || || | | | ||| ||||| || ||||| |||
Sbjct 20550 AGCTTACTGATC--GTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGCAAATGT 20607
Query 133036 AAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCT 133095
| | |||| || || | | | | || |||| || || ||||| | ||||
Sbjct 20608 ACGCGCCACGATCAGCCGAGAGATCCAAGATCGACTTCTGCTTAATTTCCCACACTGTCT 20667
Query 133096 TGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGG 133155
|| | | |||||||| | || || | || || |||||||| || |||
Sbjct 20668 TGTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCACCGTCGT 20727
Query 133156 CCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGA 133215
|| ||| | |||||| | ||| || || | ||| | || || || | | || | |
Sbjct 20728 TCAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCA 20787
Query 133216 GATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACG 133275
| |||| ||| || | ||||||||| || || ||||| | | || | ||||||||
Sbjct 20788 GGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACG 20847
Query 133276 TGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGT 133335
|| |||| || | || ||||||||||| || ||||| ||||||| ||||| |||||
Sbjct 20848 TGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTG 20907
Query 133336 ACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCC 133395
|||||| | || |||||| | | ||| |||||| | | ||| || ||| || |||
Sbjct 20908 GCGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTCTCCTTCAACTCCGTCC 20967
Query 133396 AGTCCCACAGA 133406
||||||| |||
Sbjct 20968 AGTCCCAAAGA 20978
>seq151
Length=51439
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| || || |||||||| ||||||| ||||| || ||
Sbjct 38291 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTC 38350
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || || |||| || |||||||| || || || ||||||||||||||
Sbjct 38351 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38410
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || || | || | | ||| | ||| || || | || | ||| ||
Sbjct 38411 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38470
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| || || || |||||||||||
Sbjct 38471 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38500
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| || || |||||||| || |||| || || || ||
Sbjct 38063 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGGCCGTCTTC 38122
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || || |||| || |||||||| || || || ||||||||||||||
Sbjct 38123 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38182
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || || | || | | ||| | ||| || || | || | ||| ||
Sbjct 38183 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTAATCGTCTT 38242
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| |||| || || || ||||||||||||
Sbjct 38243 CCCTGTCAACGTCTTCACGAAAATCTGCATG 38273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433766497595512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |