Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq2192 122 2e-22 >seq2192 Length=7014 Score = 122 bits (134), Expect = 2e-22 Identities = 259/387 (67%), Gaps = 0/387 (0%) Strand=Plus/Minus Query 189281 ATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATGATAGTATC 189340 || || ||| |||| ||| | || || ||||| ||||| || |||||||||||| | Sbjct 6878 ATCGTGAGACGAGAGCTAGCTGACAACTTTTGCTACTACAATCCTCATTATGATAGTTTT 6819 Query 189341 CAGTCTACTCATTCATGGGCCAGAAAAACATTAGAAGATCACATTAATGATCCTAGAAAG 189400 || || ||||||| | ||| ||| || || || || |||| || ||| Sbjct 6818 GAGGGATTTCCGGCATGGGCAAAAAAGACACTACTCGAGCATATAGATGACCCAAGATCA 6759 Query 189401 TATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCG 189460 || | ||||| || || ||||| ||| | || ||||||||||| ||||| || Sbjct 6758 CATCTGTATTCTCAGGAAGAATTCGAAGCAGCAAAGACGCATGATCCTCTGTGGAATGCC 6699 Query 189461 TCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCT 189520 | || || ||||||| | | ||| || |||||| | | | |||| ||||| ||||| Sbjct 6698 ACTCAGCTGGAGATGGTAAAACGAGGCAAGATGCATGGCTATATACGTATGTACTGGGCG 6639 Query 189521 AAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGTATCTATTTG 189580 ||||| | | |||||||| | ||| || || | ||| | | | || ||| | Sbjct 6638 AAGAAACTTTTGGAATGGACCAAAACTCCGGAGGTCGCCCTTCGCATCGGGATATATCTC 6579 Query 189581 AACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCT 189640 || | || ||||| ||||| || |||||| || ||||| || || | |||||| Sbjct 6578 AATGATAAATACGAGCTAGATGGTCGGGATCCCAATGGATATGTGGGCTTAGCATGGTCT 6519 Query 189641 ATTTGCGGATTACACGATAGAGCGTGG 189667 || | || | ||||||||||| ||| Sbjct 6518 ATAGGAGGCGTGCACGATAGAGCTTGG 6492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923057328043440