Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7203 217 1e-51 >seq7203 Length=1522 Score = 217 bits (240), Expect = 1e-51 Identities = 610/927 (66%), Gaps = 37/927 (4%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGA-AAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||| || ||| || || ||| ||||| || ||| | |||||||| | || Sbjct 616 TTAAAATTCTTCATCGAGCGAGAAAGACATTTGCTCTTTC-TGAGACATAACACCCGCTT 674 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||| ||||||| || | ||||| |||||||| ||||| |||| ||| ||||| | | Sbjct 675 TTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAATCATAT 734 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAAT---TCCAACA 16061 |||| ||||| |||||||| | | | ||| ||||| ||| ||| ||||| Sbjct 735 CCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATGATTCCAA-- 792 Query 16062 ATAATCT-ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 || | ||| |||||||| || || || || ||||| || ||||| || || Sbjct 793 --AAGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAATC 850 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || |||||| | || || |||| || | |||||| || | || || || | | | Sbjct 851 AACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCTTTCACT 910 Query 16181 ATATCTC----TTACT-------ACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACA 16229 | ||| || || | ||| || | || || ||| ||| | ||| | Sbjct 911 AAATCGTAGATTTTCTGAGGGTCATACTTGTT--CTGAATGT--AATTAGTATATAACAA 966 Query 16230 TTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATG 16289 ||| ||||| |||| || || ||||| || | | |||||||| || || |||| Sbjct 967 ----ACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGAATG 1022 Query 16290 TAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAA 16349 ||||||| ||||||| || |||||||| | ||| ||||| | | ||||| || || | Sbjct 1023 TAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGAGCAGAATGAGCCTGAGA 1082 Query 16350 AGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttac 16409 |||| |||||||| || |||||||||| | || || ||| | ||| || | | Sbjct 1083 AGAAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAAGTTTCCGTTATCA- 1141 Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTG 16469 ||||| |||||||| ||||||| || ||||| || | ||||| | Sbjct 1142 -----ATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTATGG 1196 Query 16470 CATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTA- 16528 |||||| | | || | || ||| ||||||| ||| || || || | | Sbjct 1197 CATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCAG-AAGCGAG 1255 Query 16529 TACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCG 16588 || ||||||||||||| || ||||| ||||| |||||||| || ||| | |||||| Sbjct 1256 TAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCTTCG 1315 Query 16589 GATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTA 16648 | | |||||| |||| ||| | |||| |||||||| ||||| || ||||| | Sbjct 1316 GCAAATTGTACACGAGAGATAAAATTGACTGCCAAGTTTTCATTAACGATACCATCAGAA 1375 Query 16649 GCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAAC 16708 || ||||||||||| | || || |||||||| || ||| || || | Sbjct 1376 GCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGCTTTCC 1435 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 ||||| ||||| ||||| || | ||||| | ||||| || ||||| || Sbjct 1436 CAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCTCATGT 1495 Query 16769 TTTTTATACATTTTCCATATGTCTTCG 16795 |||||||| | || ||| || || ||| Sbjct 1496 TTTTTATAAAATTGCCAGATATCATCG 1522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462442125999600