Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq760 98.7 2e-15 seq732 84.2 5e-11 >seq760 Length=22369 Score = 98.7 bits (108), Expect = 2e-15 Identities = 255/383 (67%), Gaps = 12/383 (3%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| |||||||||||| | || ||||| || || || |||||||| || || | || Sbjct 8752 CTTCCCCATTTGCTTTTCTATGGACCTCCAGGCACTGGAAAGACGTCCACGATTGTAGCT 8811 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAA---CATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 ||| || || || ||| || || || | ||| | | ||||||||| Sbjct 8812 GTGGGGCGTCAACTCTTTGGCTCGGATTTTCGCAAGAATGGTCGCTTCTTAGAGCTGAAC 8871 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC-CAAGAT 254176 || || || || || || | | || || || || ||| |||| | ||| | |||| Sbjct 8872 GCGTCAGATGACCGGGGCATTAAGGTGGTGCGGGAAAAGGTCAAAAGCTTCGCTCAAGGA 8931 Query 254177 GTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGC 254236 | | || || ||| | ||| || ||||| ||| || | | || |||||||| Sbjct 8932 GCCA--TTAGTACCGCCAGC--GGCCTCCCCCCTTTTAAGATCATTGTGCTAGACGAGGC 8987 Query 254237 GGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGT 254296 ||| | ||||| | ||||| ||||| || | || || | |||||||| |||| Sbjct 8988 CGACTCGATGACAGGGGACGCACAGTCGGCATTGCGTCGCATGATGGAGAATTACTCTAA 9047 Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCCCGCTGGCT 254354 || |||||||| || || | || ||||||||| ||| | |||||| || |||| Sbjct 9048 GGTCACGCGTTTCTGTCTAATTTGTAACTACGTGAGTCGTA--TCATCGAGCCCGTGGCC 9105 Query 254355 TCTCGGTGCGCCAAGTTTCGATT 254377 || || || ||||||||||| || Sbjct 9106 TCGCGATGTGCCAAGTTTCGCTT 9128 >seq732 Length=22061 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| |||||||| ||||| ||||| || Sbjct 8663 ACACCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGC 8722 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTT 157332 || |||||||||||||| || |||||||| Sbjct 8723 GAGATCATGTCCATCCAGTCAAATGGGTT 8751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073600125259648