Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq7203 194 2e-44 seq4369 129 6e-25 >seq7203 Length=1522 Score = 194 bits (214), Expect = 2e-44 Identities = 598/908 (66%), Gaps = 39/908 (4%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAA-ACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13914 ||||| || |||| | ||| ||| ||||| | ||||| | ||| ||||| ||| ||| Sbjct 617 TAAAATTCTTCATCGAGCGAGAAAGACATTTGC-TCTTTCTGAGACATAACACCCGCTTT 675 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||| ||||||| || | |||||| ||||| || ||||| |||| | || || | || Sbjct 676 TTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAATCATATC 735 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT---TCTAATAG 14031 ||| ||||| || ||||| || | || | | ||||| | |||| | || || || Sbjct 736 CATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATGATTCCAAAAG 795 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 ||| || | |||||||| ||||| |||||| || |||||| || || | Sbjct 796 GTG---ATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAATCAA 852 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 ||||| | || |||| ||||||||||| || || || || || | | Sbjct 853 CGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCTTTCACTA- 911 Query 14152 AATCGTAATAATTTCATTAGAAGGAGGATATTT----TAGATGTT-----TAAAAATTAA 14202 ||||||| |||| | || | ||| || | |||| || | | || Sbjct 912 AATCGTAG--ATTTTCTGAG---GGTCATACTTGTTCTGAATGTAATTAGTATATAACAA 966 Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||| |||| || | ||| ||||| | | ||| | || || || ||||| | Sbjct 967 ACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGAATGTAAG 1026 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGA 14321 || ||||| || || |||||||| ||||| ||||| | ||| |||||| || || |||| Sbjct 1027 ACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATGAGCCTGAGAAGA 1085 Query 14322 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14381 | || || || || | ||||| |||| | || || ||| ||| ||| Sbjct 1086 AAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAAG------TTTCCGTTAT 1139 Query 14382 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14441 ||||| |||||| || | |||||| || | | | || || || |||| Sbjct 1140 CAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTATGGCAT 1199 Query 14442 TAAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTA-T 14498 ||| | | || ||| || | |||| || | | |||||| || |||| | | Sbjct 1200 TAAGCATTTTATCTCGCTCAACAGGGTCTTTGATAT--AAGAATCAATCAG-AAGCGAGT 1256 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 | |||| || || ||||||||||| ||||| |||||||| |||||| | ||||| | Sbjct 1257 AAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCTTCGG 1316 Query 14559 ACCATTGTACCTCTGAG-TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 ||||||| ||| |||||| | | ||||| ||||||||||| ||||||||| | Sbjct 1317 CAAATTGTACACGAGAGATAAAAT-TGACTGCCAAGTTTTCATTAACGATACCATCAGAA 1375 Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTC 14677 || |||||||| ||||||| | |||||| | |||| ||| ||| || ||| | Sbjct 1376 GCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGCTTTCC 1435 Query 14678 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCT 14737 || || |||||| || || |||| ||| || ||||||| || ||| || | Sbjct 1436 CAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCTCATGT 1495 Query 14738 TTTTTATA 14745 |||||||| Sbjct 1496 TTTTTATA 1503 >seq4369 Length=2652 Score = 129 bits (142), Expect = 6e-25 Identities = 365/556 (66%), Gaps = 10/556 (2%) Strand=Plus/Minus Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266 |||||||||||||| | ||| || || | | ||| | ||| || || || || || ||| Sbjct 2617 GCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCT 2558 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 ||||| || || |||||||| |||||| | || | | ||| | || || |||||||| Sbjct 2557 GGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATC 2498 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 ||||| || || || || || | || || |||| | | | || |||| Sbjct 2497 CCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTCTTC------TATC 2444 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 || || ||||||| | ||| || ||| || || || | || | |||| Sbjct 2443 CACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAAT 2384 Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT-AAGTAAGCTATACATTTC 14505 || | |||| ||| | | ||| ||||||||||| ||| || || | || Sbjct 2383 AACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAG-TAAGTCTC 2325 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 || |||||||||||||| |||||||| ||||| | ||| | || || | | || Sbjct 2324 AGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTG 2265 Query 14566 TACCTCTGAG-TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14624 |||||| |||||| | | || | || ||||| ||||| ||||| ||| |||| Sbjct 2264 CACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAA 2206 Query 14625 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGG 14684 | || ||||| || | ||| || | | || |||| | || |||||||||| | Sbjct 2205 AGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCG 2146 Query 14685 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTAT 14744 | || || | || | ||| | ||| ||| | |||||||| || |||||||||||| Sbjct 2145 CAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTAT 2086 Query 14745 ACATTACCCATATTTC 14760 ||| |||||| || Sbjct 2085 ACAACTGCCATATATC 2070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482272729638480