Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq413 113 9e-20 >seq413 Length=60602 Score = 113 bits (124), Expect = 9e-20 Identities = 305/453 (67%), Gaps = 14/453 (3%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 |||||| ||| |||||| ||||| || | ||||||||||||| ||| | | | Sbjct 14393 ATCTGGGACGGTAATGGATCGCGTGAGTACCTGGACAGTAGAGGCTTACAGTCACGGGAG 14334 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 | ||||| | ||||| ||||| || ||||| ||||||||||| ||||| | || Sbjct 14333 GTAGGAGACCTTGGACCAGTATATGGTTTCCAGTGGCGTCATTTCGGTGCAAAGTACACC 14274 Query 35453 -ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGAC 35511 || || | |||| ||||| || | || | || || | || | | || | | Sbjct 14273 GACATGCA-TGCCGACTATACAGGCCAAGGCGTGGACCAGCTCGCTGAGGTGATACACAA 14215 Query 35512 CCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571 || | ||| || |||| | | || | || |||| |||||||| ||||| Sbjct 14214 ACTCCGGACAAACCCTTCTGATCGCCGTATCGTGCTGTCGGCCTGGAATCCGGCTGATCT 14155 Query 35572 TCACCTTATGGCTCTTCCTCCATGCCACATGA-CTGCTCAATTTTATGTGGCTAATGGAG 35630 | | ||||| || || || ||||||||| ||| ||| ||||| || ||| | || | Sbjct 14154 TAATGACATGGCGCTGCCGCCGTGCCACATGTTCTG-TCAGTTTTACGTAGCTGACGGTG 14096 Query 35631 AATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAA 35688 | |||||||||||| |||| ||||| ||| || ||| ||| | ||||| || ||||| Sbjct 14095 AGTTGTCGTGCCAGATGTACCAGCGCTCAGCTGACATG--GGGCTCGGCGTCCCATTCAA 14038 Query 35689 TATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGG 35747 ||| || ||| | || || || | | |||| ||| ||| ||| | ||||| | Sbjct 14037 TATCGCCAGCTACGCGCTGCTAACGCGCTTAGTGGCACAG-GTGGCAGGTTTGAAACCCG 13979 Query 35748 GAGAGTTTATCCTCA-CTC-TTGGTGACGCACA 35778 | |||||||| ||| || |||||||||| || Sbjct 13978 GCGAGTTTAT--TCATGTCATTGGTGACGCGCA 13948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989430761062130