Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq10424 562 1e-155 >seq10424 Length=1083 Score = 562 bits (622), Expect = 1e-155 Identities = 695/944 (74%), Gaps = 34/944 (4%) Strand=Plus/Minus Query 33316 TGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGC-- 33373 |||| ||| ||||| ||| |||||||| ||||||||||| | || ||| |||| Sbjct 925 TGAATCGCCCCGGGTTTCGCGGAGGCTGTTTGGTTTAAGTCA----GGTCACCACAGCAG 870 Query 33374 -GGCATTTCTGA---GTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGC 33429 ||| | || |||| | ||||||||||||||||| ||||| |||||||| || | Sbjct 869 TGGCCTGATTGGCACGTTGCCGATAGTAGTTTGCCTCAGCCTCAGCAGGCGGGATGTACC 810 Query 33430 CGAGCGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTT 33489 ||| ||||| | ||| ||||| |||||| | ||| ||||| || | | Sbjct 809 CGATGGGTTCGAGCAGGCGATGGTGGTTGAA-----------ATTTGAGCGTGGCAAACT 761 Query 33490 CGACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGC 33549 |||| | |||| | |||||||| || || || || ||||||||||| | ||||||||||| Sbjct 760 CGACTGCTTCCTTGGTTTTCCATGGAGCCCGGCGGTGAATCAGTTCGGCCTTGTACAGGC 701 Query 33550 CGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCT 33609 ||||||| || |||||||| || |||||||||||||||||| |||||| || || |||| Sbjct 700 CGTTGATGGTCTCGGCCAGGGCGTTGTCGTAGCTGTCGCCCTTGCTGCCCACCGAAGGCT 641 Query 33610 CGATGCCGGCCTCAG-----CCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCC 33664 ||||||| || || | |||| || ||| |||||||||||||||||||||| || || Sbjct 640 CGATGCCAGCTTCTGTTCCGCCAGTCGCTCGGTGTAGCGAATGCTGACGTATTGCGAGCC 581 Query 33665 CCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCC-GGTTGGCGGGCGTACAGCGCTT 33723 || ||||| ||| || |||| | || || ||| | || || ||||| || || |||| Sbjct 580 TCTATCGGAGTGACAAACCAAACTGCCATCG-CGCTCAGGCTGACGGGCATAGAGGGCTT 522 Query 33724 GTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAA 33783 | || || || || ||||||||||||||| ||| || ||| |||||||| ||||| | Sbjct 521 GCTCCAGGGCGTCGAGAACAAAGTCCGTGCGCATTGAACTGCTCACCCGCCACCCAACGA 462 Query 33784 TACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGA 33843 | || | ||| ||||||||||| ||||| || |||||||||||||||||||| ||||| | Sbjct 461 TGCGCCTGGCAAACACGTCGATGACGAAGGCTACGTACAGCCAGCCTTGCCAAGTCGAAA 402 Query 33844 CATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGA 33903 | || || || || |||||| | || ||||| | || ||| |||||||||||||| Sbjct 401 CGTAAGTGAAGTCGCTCACCCACAAATGGTTCGGCCTCTCGGCCCGGAACTGCCGGTTGA 342 Query 33904 CTCGGTCCAGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGC 33963 | ||||||| || | || || | |||| | | || || || || ||| |||| Sbjct 341 CCCGGTCCAATGGACATGGTGCTTTGCCATCACTGACGGTGGTTCGTACGGCCTTGCCGC 282 Query 33964 GAACTGCGCCACGCAAGCCC-TGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACC 34022 | | | ||||||| ||| ||| || ||||| || | ||||||||||| ||||| Sbjct 281 GCATCACACCACGCAGTCCCATGCTGC-GCATCAGACGCTCTACCGTGCAGCGGGCCACG 223 Query 34023 GTAATGCCTTCCCGGTTCATCTGCTTCCAGACCT--TCGGCACGCCGTAGACCTGCATGT 34080 || | |||||| || | || ||| |||| |||| |||| || |||||||||| Sbjct 222 GTCACGCCTTCGCGTGCTAGTTGTCGCCATACCTTGTCGG--CGCCATAAACCTGCATGT 165 Query 34081 TGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAAAGCTCATCGCGTTTCGCGCGGGCGC 34140 ||||||||||||| || | ||| ||| || | || ||||||||||| | |||| Sbjct 164 TGGCCTGCCAGACTCGTTGAATCAGCGGCATCAGCAATTCGTCGCGTTTCGCTCTAGCGC 105 Query 34141 AGCGTTTCGACGGATCGCGAAGTTGTGCTGCATGGCGTCGGTAGCCCGACGGGGCAATCC 34200 ||||||| || ||||| | | || || ||||| || || | |||| ||||| | Sbjct 104 AGCGTTTGTGAGGCTCGCGCACCAGCGCGGCGTGGCGCCGATACGCTGACGCGGCAACCT 45 Query 34201 GCAAGACCTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGC 34244 ||||||||||||||| ||||||||||||||| | | ||||||| Sbjct 44 GCAAGACCTTGCAGAGCGGCTCGACCCCGAAAGCATTGCGATGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170647504941220