Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq3648 104 5e-18 seq8013 84.2 4e-12 seq2355 82.4 2e-11 >seq3648 Length=3382 Score = 104 bits (114), Expect = 5e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 348 TGAATATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGC 407 ||||| | | ||||||| ||||| ||||||||||| |||||||| ||||||||||| | Sbjct 945 TGAAT-TAAGTGGTGGGCCGTGATGGATTCGAACCATCGACCAAAAGATTAAAAGTCTTC 887 Query 408 TGCTCTACCGACTGAGCTAACGACCCA 434 |||||||||||||||||||||| |||| Sbjct 886 TGCTCTACCGACTGAGCTAACGGCCCA 860 >seq8013 Length=1375 Score = 84.2 bits (92), Expect = 4e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 360 GTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCGAC 419 |||||| |||||| ||||||||||||||| | |||||| |||| ||||||||||| || Sbjct 77 GTGGGTTATGAAGGGTTCGAACCTTCGACCCGCTGATTAAGAGTCAGCTGCTCTACCAAC 136 Query 420 TGAGCTAACGACCC 433 |||||||| |||| Sbjct 137 TGAGCTAATAACCC 150 >seq2355 Length=6372 Score = 82.4 bits (90), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 352 TATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCT 411 |||| ||||| || ||| || ||||||| |||| |||||||||||||||||||||| Sbjct 6337 TATT-TTGGTAGGGTGTGCGGGGATCGAACCCACGACAAACGGATTAAAAGTCCGCTGCT 6279 Query 412 CTACCGACTGAGCTAACGACCCAAT 436 ||||| |||||||||| |||||| Sbjct 6278 CTACCAGCTGAGCTAACACCCCAAT 6254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100689546836040