Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_003315.1
Length=31508
Score E
Sequences producing significant alignments: (Bits) Value
seq3648 104 5e-18
seq8013 84.2 4e-12
seq2355 82.4 2e-11
>seq3648
Length=3382
Score = 104 bits (114), Expect = 5e-18
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 348 TGAATATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGC 407
||||| | | ||||||| ||||| ||||||||||| |||||||| ||||||||||| |
Sbjct 945 TGAAT-TAAGTGGTGGGCCGTGATGGATTCGAACCATCGACCAAAAGATTAAAAGTCTTC 887
Query 408 TGCTCTACCGACTGAGCTAACGACCCA 434
|||||||||||||||||||||| ||||
Sbjct 886 TGCTCTACCGACTGAGCTAACGGCCCA 860
>seq8013
Length=1375
Score = 84.2 bits (92), Expect = 4e-12
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 360 GTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCGAC 419
|||||| |||||| ||||||||||||||| | |||||| |||| ||||||||||| ||
Sbjct 77 GTGGGTTATGAAGGGTTCGAACCTTCGACCCGCTGATTAAGAGTCAGCTGCTCTACCAAC 136
Query 420 TGAGCTAACGACCC 433
|||||||| ||||
Sbjct 137 TGAGCTAATAACCC 150
>seq2355
Length=6372
Score = 82.4 bits (90), Expect = 2e-11
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 352 TATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCT 411
|||| ||||| || ||| || ||||||| |||| ||||||||||||||||||||||
Sbjct 6337 TATT-TTGGTAGGGTGTGCGGGGATCGAACCCACGACAAACGGATTAAAAGTCCGCTGCT 6279
Query 412 CTACCGACTGAGCTAACGACCCAAT 436
||||| |||||||||| ||||||
Sbjct 6278 CTACCAGCTGAGCTAACACCCCAAT 6254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 100689546836040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |