Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4369 159 3e-34 >seq4369 Length=2652 Score = 159 bits (176), Expect = 3e-34 Identities = 379/569 (67%), Gaps = 9/569 (2%) Strand=Plus/Minus Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||||||||||||| |||||||| | | || | ||||||||| || || || || Sbjct 2617 GCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCT 2558 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 ||||| || || |||||||| | |||| | |||| | || | ||| || |||||||| Sbjct 2557 GGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATC 2498 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT--ACCTTGTTGCTAGATATCC 11810 |||||||| || || || | | | || || || ||| | || ||||| Sbjct 2497 CCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTCTTC-----TATCC 2443 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 | || ||||| | |||||||| | | || || |||| || | ||||| Sbjct 2442 ACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATA 2383 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 | | ||||||| ||| | | ||||||||| || || | | || | || | Sbjct 2382 ACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCAG 2323 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 ||| || |||||||| || ||||||||||||| ||| |||||||| | ||| | Sbjct 2322 CATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGCA 2263 Query 11991 CATCCA-CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 | || |||||||| | | |||| ||||||||||| || ||||| || ||||| Sbjct 2262 CCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAAG 2204 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT 12109 || || | ||||| || || | | |||| || | | ||| | | |||||| | Sbjct 2203 AACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGCA 2144 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169 || || | || ||||| | ||||||| | |||||||| || | | || ||||||| Sbjct 2143 AAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATAC 2084 Query 12170 ATTTTCCAGATATCATGATACTTAATAGG 12198 | | ||| ||||||| || ||| || || Sbjct 2083 AACTGCCATATATCATCATGCTTGATGGG 2055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468454017615840