Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7203 286 5e-72 seq4369 143 4e-29 seq732 143 4e-29 seq75 140 4e-28 >seq7203 Length=1522 Score = 286 bits (316), Expect = 5e-72 Identities = 632/928 (68%), Gaps = 30/928 (3%) Strand=Plus/Plus Query 35802 TTATGTTTCTTTAAAAATCAACATCTAG--AGAAAAATGATTG-TCTTCTTGAGACATAA 35858 || ||| |||| |||| || |||| || ||||| | ||| |||| |||||||||| Sbjct 607 TTTTGTATCTT-AAAATTCTTCATCGAGCGAGAAAGACATTTGCTCTTTCTGAGACATAA 665 Query 35859 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 35918 | ||| ||||||||||||||| |||||||||||||| ||||| ||||| |||| ||| | Sbjct 666 CACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACG 725 Query 35919 ATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAAT- 35977 | || | |||||||||||||| |||||| | ||||||||||||| |||| ||| ||| Sbjct 726 AAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATG 785 Query 35978 -TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCAT 36036 | ||| | ||| || ||||| || || ||| ||| | ||| |||||| Sbjct 786 ATTCCAAA--AGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCAT 843 Query 36037 TCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 36096 || || | ||| || || || |||| | ||||||| ||| || || || || Sbjct 844 GCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATC 903 Query 36097 TGTTA-TAA----TAGATATTACT--GTTTCTTCACTCG--GTGGATACAATAAATGTTT 36147 | | | ||| ||||| || || | || | ||| | || || ||| | | | | Sbjct 904 TTTCACTAAATCGTAGAT-TTTCTGAGGGTCAT-ACTTGTTCTGAATGTAATTAGTATAT 961 Query 36148 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 || |||||| || || || | ||||| || || || | | |||||| || || || Sbjct 962 AA----CAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGA 1017 Query 36208 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATC 36266 || || || || ||||||| ||||| ||||| | ||| ||||| || ||| ||||| | Sbjct 1018 GAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGA-GCAGAATGAGC 1076 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326 | || |||||||| |||||||| | ||||| || ||| | || |||| | | Sbjct 1077 CTGAGAAGAAAATACCTTCTACAACGGCAAATGC--TAACAGGCGGTCAATAA-AGTTTC 1133 Query 36327 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 || || ||||| |||||||||||| || || |||||||| || || |||| Sbjct 1134 CGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTA 1193 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 | ||||||| | | | | ||| | ||||| | ||| | |||||||| ||| Sbjct 1194 TGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCAGAAGCG 1253 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 || |||| |||||||||||||| || || || || || ||||||||| | || | Sbjct 1254 AGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCTT 1313 Query 36507 CGGTAATCTGTACTTCTG-TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 ||| || ||||| | | ||||| | |||| || |||||||| || || || ||| Sbjct 1314 CGGCAAATTGTACACGAGAGATAAAATTG-ACTGCCAAGTTTTCATTAACGATACCATCA 1372 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 || |||||||||||||||||||| ||||||| || | || | Sbjct 1373 GAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGCTT 1432 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | ||| || || | ||| |||| || | |||||| ||||||| ||||| ||||| Sbjct 1433 TCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCTCA 1492 Query 36686 GCCTTTTTATACATATTCCAGATGTCAT 36713 |||||||| | | |||||| |||| Sbjct 1493 TGTTTTTTATAAAATTGCCAGATATCAT 1520 >seq4369 Length=2652 Score = 143 bits (158), Expect = 4e-29 Identities = 371/560 (66%), Gaps = 9/560 (2%) Strand=Plus/Minus Query 36160 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 36219 ||| ||||| || |||| || ||||| | | ||| ||||| || || || || | || Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 36220 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 36279 ||||||| ||||| ||||| | |||| | || || || | || || ||||| || Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 36280 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCA 36339 || || || ||| |||||||| || | ||| || | | || || | |||||| Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAAT---GTACCCTCTTCTATCCA 2442 Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 ||| | ||||| | || ||||| | || || || |||| || | ||| | Sbjct 2441 CTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAA 2382 Query 36400 ATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457 | | ||||| ||| ||| |||| ||||||||||||||| ||| || | || Sbjct 2381 CTTGGCCTTTTC--TACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCA 2324 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517 | ||| |||||||| || || |||||||| |||| ||| | ||||| | | ||| Sbjct 2323 GCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGC 2264 Query 36518 ACTTCTGT-ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 || ||| | | ||||| | |||| || ||||| ||||| || || || ||||| Sbjct 2263 ACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAA 2205 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATT 36636 |||||||| | ||| || |||| | |||| | |||| | |||||||| Sbjct 2204 GAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGC 2145 Query 36637 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 36696 | || | || | ||| | |||||| | |||||||| || || || || |||||||| Sbjct 2144 AAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATA 2085 Query 36697 CATATTCCAGATGTCATGAT 36716 || | ||| || |||| || Sbjct 2084 CAACTGCCATATATCATCAT 2065 >seq732 Length=22061 Score = 143 bits (158), Expect = 4e-29 Identities = 392/592 (66%), Gaps = 15/592 (3%) Strand=Plus/Plus Query 36179 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 36238 ||||| |||| |||||| | ||||| || || |||| || ||||| || || ||||| Sbjct 8984 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 9043 Query 36239 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 36297 || |||||||| || || ||| || || || || |||||||| ||||| || | ||||| Sbjct 9044 TTCAGCCAAAAGATCGA-GCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAA 9102 Query 36298 GGCAATAAGTCTCTCTCCATAACCGGC-ACT-----GTCATGTATCCACTTTTGAGCCCA 36351 || | || | ||| | || | ||| ||| | | |||||| | ||||| Sbjct 9103 TGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGGGTC--GCA-CCACTTGAGCGCCCA 9159 Query 36352 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 36411 || ||| |||||| ||||| || || ||||| || || | || | | || || Sbjct 9160 ATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTC 9219 Query 36412 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTC 36471 | ||||||| || || ||||| | || ||| | |||||| || |||||||| Sbjct 9220 CGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTC 9279 Query 36472 AATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAA 36531 ||| || || || || || || || || | ||| || | | || ||||| | | ||| Sbjct 9280 AATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAA 9339 Query 36532 TCGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 36589 |||| || | ||| || ||||| || || |||||||||||||| || || | ||| Sbjct 9340 --GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACA 9397 Query 36590 TGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 36649 || || ||||| | || || || || || ||| || |||| ||| | Sbjct 9398 TGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGTGCACC 9457 Query 36650 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 36709 | || | || || | ||||| || || || || ||||| || ||||| | ||| | | Sbjct 9458 AAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACACG 9517 Query 36710 TCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTTTTGCAAGGA 36761 || || | ||| || ||||| | ||||| | || | || || |||||| Sbjct 9518 TCGTGCTCTTGGATCGGAAAGAGCACAAAGCGGTTGGGGTTCTTCACAAGGA 9569 >seq75 Length=61118 Score = 140 bits (154), Expect = 4e-28 Identities = 760/1205 (63%), Gaps = 10/1205 (1%) Strand=Plus/Plus Query 65476 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 65535 |||| || || || |||||||| |||||||| || || | |||| | ||| ||||| | Sbjct 21100 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21159 Query 65536 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 65595 || || | |||||||||||| || || | || || |||||||| |||| || | | Sbjct 21160 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21219 Query 65596 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 65655 | | | | || || | |||||||| || || || ||||| | || || | || | Sbjct 21220 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21279 Query 65656 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-CGCTCA 65714 | || || | | || || ||| || | ||| || ||| ||| ||| | Sbjct 21280 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGC-CG 21338 Query 65715 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 65774 ||| |||||| || || || || || |||| |||||| || || || |||| | Sbjct 21339 TCTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGC 21398 Query 65775 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 65834 || | | || | ||| ||| | ||||| || ||| || || | || || Sbjct 21399 GACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGC 21458 Query 65835 TGATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 65893 || || | ||| | | ||| ||||||||||| || || || || || |||||||| Sbjct 21459 TGGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAAT 21517 Query 65894 CTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCT 65952 ||| | || | ||||| ||| | | || | || || || | || | | | Sbjct 21518 CTGCGCATCCAAGATCGCAAACCACAGCTGCTGG-GCATTGATCGTC--TTCCTCGCCCG 21574 Query 65953 TTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 66010 | ||||| ||||| | |||||| || |||||||| ||||| | || || Sbjct 21575 TCCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAG 21634 Query 66011 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 66070 || ||| ||||| ||||| | ||| ||||| || | | | ||| |||||||| Sbjct 21635 CCCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCAT 21694 Query 66071 AAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCC 66130 || ||||| || | ||| | || | || || || | | | ||| || || || Sbjct 21695 GAATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCC 21754 Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190 ||| || | |||||| ||| | | | || ||||||||||||||||| || Sbjct 21755 ATGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGAT 21814 Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250 || | ||| |||||| || || ||||| | ||||| || |||| |||| | Sbjct 21815 CGCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21874 Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310 || | | ||| || ||||| || || || | ||||| || || || ||||| Sbjct 21875 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAGCTATT 21934 Query 66311 ACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 66370 | || || ||||| || | || || || |||||| ||| || || | || Sbjct 21935 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 21994 Query 66371 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 66430 ||| |||| || ||||||||||| || || || |||||| |||| | || ||| Sbjct 21995 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAA 22054 Query 66431 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 66490 || ||||| |||| | ||| || || |||||||| | || || | || || || Sbjct 22055 GCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT 22114 Query 66491 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 66550 ||| | || | || | || | || || || | || | | || ||| || ||| Sbjct 22115 AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATG 22174 Query 66551 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 66610 || || | ||||| || | | ||| || || || | ||| |||| || ||| | Sbjct 22175 GATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGAC 22234 Query 66611 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 66670 ||||| || | ||| | |||||||| |||||||||| ||| || || || Sbjct 22235 CCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCG 22294 Query 66671 TTCGT 66675 |||| Sbjct 22295 GTCGT 22299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658073366544240