Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7203 293 3e-74 seq732 172 8e-38 seq75 145 1e-29 seq4369 129 8e-25 >seq7203 Length=1522 Score = 293 bits (324), Expect = 3e-74 Identities = 635/930 (68%), Gaps = 34/930 (4%) Strand=Plus/Plus Query 49604 TTATGTTTCTTTAAAAGTCAACATCTAGAGAAAAATG-ATTA--TCTTCTTGAGACATAA 49660 || ||| |||| |||| || |||| || || ||| ||| |||| |||||||||| Sbjct 607 TTTTGTATCTT-AAAATTCTTCATCGAGCGAGAAAGACATTTGCTCTTTCTGAGACATAA 665 Query 49661 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 49720 | ||| ||||||||||||||| |||||||||||||| ||||| ||||| |||| || | Sbjct 666 CACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACG 725 Query 49721 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT- 49779 | || | ||||||||||| || |||||||| ||||||||||||| |||| ||| ||| Sbjct 726 AAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATG 785 Query 49780 -TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCAT 49838 | ||| | ||| || ||||| || || ||| ||| | ||| |||||| Sbjct 786 ATTCCAAA--AGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCAT 843 Query 49839 TCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATC 49898 || || | ||| || || || |||| | ||||||| ||| || ||| ||||| Sbjct 844 GCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATC 903 Query 49899 TGTTA-TAA----TAGA---TCTAACGGTTTCTTCACTCG--GTGGATGCAATAAATGTT 49948 | | | ||| |||| ||| | || || | ||| | || ||| ||| | | | Sbjct 904 TTTCACTAAATCGTAGATTTTCTGAGGG--TCAT-ACTTGTTCTGAATGTAATTAGTATA 960 Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 ||| |||||| || || || | ||| | || || || | | ||||| || || | Sbjct 961 TAA----CAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAG 1016 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGAC 50067 | || || || || ||||||| ||||| ||||| | ||| ||||| || ||| ||||| Sbjct 1017 AGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGA-GCAGAATGAG 1075 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGC-AACAAGTCTCTCTCCATAACTGGC 50126 || || ||||| || |||||||| ||||||| || |||| | | || |||| | Sbjct 1076 CCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGG---CGGTCAATAA-AGTT 1131 Query 50127 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 | || || ||||| |||||||||||| || || |||||||| || || || Sbjct 1132 TCCGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTC 1191 Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 ||||||||||| | | | | ||| | ||||| | ||||| ||| |||| ||| Sbjct 1192 TATGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCAGAAG 1251 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 || |||| |||||||||||||| || ||||| || || ||||||||| | || Sbjct 1252 CGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGC 1311 Query 50307 CTCGGTAATCTGCACTTCTG-TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365 |||| || || || | | ||||| | | || || |||||||| || || || | Sbjct 1312 TTCGGCAAATTGTACACGAGAGATAAAATTG-ACTGCCAAGTTTTCATTAACGATACCAT 1370 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT 50425 || || |||||||||||||||||||| |||||||| || | || Sbjct 1371 CAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGC 1430 Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 | | ||| || || | ||| |||| |||| |||||| ||||||| ||||| |||| Sbjct 1431 TTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCT 1490 Query 50486 CTGCCTTTTTATACATATTCCAGATGTCAT 50515 | |||||||| | | |||||| |||| Sbjct 1491 CATGTTTTTTATAAAATTGCCAGATATCAT 1520 >seq732 Length=22061 Score = 172 bits (190), Expect = 8e-38 Identities = 389/577 (67%), Gaps = 17/577 (3%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| ||||| |||| |||||| || ||||| || || |||| || ||||| || || Sbjct 8977 GTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 9036 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 ||||| || |||||||| || || ||| || || || || ||||| || ||||| || | Sbjct 9037 GCGCTTCTTCAGCCAAAAGATCGA-GCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCG 9095 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATA-------ACTGGCGCTGTCATGTATCCACTTT 50145 |||||| || | || | ||| | || ||| | | ||| | | |||||| Sbjct 9096 AGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGG-GTC--GCA-CCACTTG 9151 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205 | ||||||| ||| |||||| ||||| || || || || || || | || | Sbjct 9152 AGCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGA 9211 Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 | || || | ||||||| || || || || | || ||| | |||||| || Sbjct 9212 TCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGG 9271 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||||||||| || ||||| || || || || || | ||| || | | |||||||| Sbjct 9272 ATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCA 9331 Query 50326 GTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383 | | ||| ||||| || | ||| || ||||| || || |||||||||||||| || | Sbjct 9332 TTGCTAAA--GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGG 9389 Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATAT 50443 | | ||||| || ||||| || || ||| || || || ||| || |||| || Sbjct 9390 CGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGAT 9449 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 | | | |||| || || | ||||| || || || || ||||| || ||||| | Sbjct 9450 CGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCT 9509 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||| | ||| || | |||||| || || | ||||| Sbjct 9510 GCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAAA 9546 >seq75 Length=61118 Score = 145 bits (160), Expect = 1e-29 Identities = 760/1205 (63%), Gaps = 10/1205 (1%) Strand=Plus/Plus Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 |||| || || || ||||| || |||||||| || || | |||| ||| ||||| | Sbjct 21100 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21159 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 || || | |||||||||||| || || | || || |||||||| |||| || | | Sbjct 21160 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21219 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | | | || || | |||||||| || || || ||||| | || || | || | Sbjct 21220 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21279 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCAT 79594 | || || | | || || ||| || | || || ||| ||| || | Sbjct 21280 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21339 Query 79595 CTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 79654 || |||||| || || ||| || || |||| |||||| || || || |||| | Sbjct 21340 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21399 Query 79655 CCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714 || | | || | |||| ||| | |||||| || || || || | || || | Sbjct 21400 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21459 Query 79715 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 | || | ||| | | ||| ||||||||||| || || || || || ||||||||| Sbjct 21460 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21518 Query 79774 TGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTG-TATCTCT 79831 || | || | ||||| ||| | | || | || || || | ||| | | | Sbjct 21519 TGCGCATCCAAGATCGCAAACCACAGCTGCTGG-GCATTGATCGT---CTTCCTCGCCCG 21574 Query 79832 TTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAA 79889 | ||||| ||||| | | ||| || || |||||||| ||||| |||| | Sbjct 21575 TCCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAG 21634 Query 79890 TCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCAT 79949 || ||| ||| | ||||| | ||| ||||| |||| | | || |||||||| Sbjct 21635 CCCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCAT 21694 Query 79950 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 || ||||| || | ||| | || | || | || | | | ||| || || || Sbjct 21695 GAATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCC 21754 Query 80010 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 80069 ||| || | |||||| ||| | | | || | ||||||||||||||||| || Sbjct 21755 ATGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGAT 21814 Query 80070 GGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 80129 || | ||| |||||| || || ||||| | ||||| || |||| |||| | Sbjct 21815 CGCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21874 Query 80130 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 80189 || | | ||| || ||||| || || || | ||||| || || || ||||| Sbjct 21875 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAGCTATT 21934 Query 80190 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 |||| || ||||| || | || || || |||||| ||| || || | || Sbjct 21935 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 21994 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| |||| || ||||||||||| || || ||| |||||| |||| | || ||| Sbjct 21995 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAA 22054 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 || ||||| |||| | ||| || || |||||||| | || || | || || || Sbjct 22055 GCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT 22114 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 80429 ||| | || | |||| || | || || || | || | || ||| || ||| Sbjct 22115 AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATG 22174 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 || || | |||||| || | | ||| || || || | ||| |||| || || | Sbjct 22175 GATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGAC 22234 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 ||||| ||| | ||| | |||||||| |||||||||| ||| || || || Sbjct 22235 CCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCG 22294 Query 80550 TTCGT 80554 |||| Sbjct 22295 GTCGT 22299 >seq4369 Length=2652 Score = 129 bits (142), Expect = 8e-25 Identities = 388/594 (65%), Gaps = 9/594 (2%) Strand=Plus/Minus Query 49962 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 50021 ||| ||||| || || | || ||||| | | ||| | ||| || || || || | || Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 50022 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGAT 50081 ||||||| ||||| ||||| | |||| | || || || | || || ||||| || Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 50082 TCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCA 50141 || || || || ||||||| || | ||| || | | | || | |||||| Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCC---TCTTCTATCCA 2442 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 ||| | ||||| | || ||||| | || || || |||| | | ||| | Sbjct 2441 CTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAA 2382 Query 50202 ATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 | | ||||| ||| ||| |||| ||| ||||| ||||| ||| || | || Sbjct 2381 CTTGGCCTTTTC--TACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCA 2324 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 | ||| |||||||| || ||||||||||| |||| ||| | ||||| | | |||| Sbjct 2323 GCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGC 2264 Query 50320 ACTTCTGT-ACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 || ||| | | ||||| |||||| || ||||| ||||| || || || ||||| Sbjct 2263 ACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAA 2205 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 |||||||| | ||| || |||||| |||| | |||| | |||||||| Sbjct 2204 GAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGC 2145 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 | || | || | ||| | |||||| | |||||||| || || || || |||||||| Sbjct 2144 AAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATA 2085 Query 50499 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || | ||| || |||| || | ||| || | | ||||| | || ||||| Sbjct 2084 CAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAACCGATCCGGATT 2031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718160287541040