Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7203 179 4e-40 seq4369 114 1e-20 seq732 111 2e-19 >seq7203 Length=1522 Score = 179 bits (198), Expect = 4e-40 Identities = 595/909 (65%), Gaps = 41/909 (5%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAA-ACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582 ||||| || |||| | || ||| ||||| | ||||| | ||| ||||| ||| ||| Sbjct 617 TAAAATTCTTCATCGAGCGAGAAAGACATTTGC-TCTTTCTGAGACATAACACCCGCTTT 675 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||| ||||||| || | |||||| ||||| || ||||| |||| | || || | || Sbjct 676 TTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAATCATATC 735 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT---TCTAATAG 13699 ||| ||||| || ||||| | | || | | ||||| | |||| | || || || Sbjct 736 CATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATGATTCCAAAAG 795 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||| || | ||||||||| ||||| |||||| || |||||| || || | Sbjct 796 GTG---ATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAATCAA 852 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 ||||| | || |||| ||||||||||| || || || ||||| | | Sbjct 853 CGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCTTTCACTA- 911 Query 13820 AATTGTA-ATAATCTCATTAGAAGGAGGATATTT----TAGATGTT-----TAAAAATTA 13869 ||| ||| || ||| | || ||| || | |||| || | | | Sbjct 912 AATCGTAGATTTTCTGA------GGGTCATACTTGTTCTGAATGTAATTAGTATATAACA 965 Query 13870 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13929 |||| ||||| |||| || | ||| ||||| | | ||| | || || || ||||| | Sbjct 966 AACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGAATGTAA 1025 Query 13930 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAG 13988 || ||||| || || |||||||| ||||| ||||| | |||| ||||| || || ||| Sbjct 1026 GACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATGAGCCTGAGAAG 1084 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || || || || | ||||| |||| | || || ||| ||| ||| Sbjct 1085 AAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAAG------TTTCCGTTA 1138 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 ||||| |||||| || | |||||| || | | | || || || ||| Sbjct 1139 TCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTATGGCA 1198 Query 14109 TTAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTA- 14165 |||| | | || ||| || | |||| || | | |||||| || |||| | Sbjct 1199 TTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATAT--AAGAATCAATCAG-AAGCGAG 1255 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 || |||| || || ||||||||||| ||||| |||||||| || ||| | ||||| Sbjct 1256 TAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCTTCG 1315 Query 14226 GACCATTGTACTTCCGAG-TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | ||||||| ||| |||||| | | ||||| ||||||||||| ||||||||| Sbjct 1316 GCAAATTGTACACGAGAGATAAAAT-TGACTGCCAAGTTTTCATTAACGATACCATCAGA 1374 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14344 ||| |||||||| ||||||| | |||||| | |||| ||| | | || ||| Sbjct 1375 AGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGCTTTC 1434 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 ||| || |||||| || || |||| ||| || ||||||| || ||| || Sbjct 1435 CCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCTCATG 1494 Query 14405 TTTTTTATA 14413 ||||||||| Sbjct 1495 TTTTTTATA 1503 >seq4369 Length=2652 Score = 114 bits (126), Expect = 1e-20 Identities = 362/556 (65%), Gaps = 10/556 (2%) Strand=Plus/Minus Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 |||||||||||||| | ||| || || | | ||| | ||| || || || || || ||| Sbjct 2617 GCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCT 2558 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||| || || |||||||| |||||| | || | | || | || || |||||||| Sbjct 2557 GGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATC 2498 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 ||||| || || || || || | || || |||| | | | || |||| Sbjct 2497 CCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTCTTC------TATC 2444 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 || || ||||||| | ||| || ||| || || || | || | |||| Sbjct 2443 CACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAAT 2384 Query 14115 AAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT-AAGTAAGCTATACATTTC 14173 || | |||| ||| | | ||| ||||||||||| ||| || || | || Sbjct 2383 AACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAG-TAAGTCTC 2325 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTG 14233 || |||||||||||||| |||||||| ||||| | || | || |||| | || Sbjct 2324 AGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTG 2265 Query 14234 TACTTCCGAG-TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14292 || || |||||| | | || | || ||||| ||||| ||||| ||| |||| Sbjct 2264 CACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAA 2206 Query 14293 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGG 14352 | || ||||| || | ||| || | | || |||| || || |||||||||| | Sbjct 2205 AGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCG 2146 Query 14353 ATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14412 || || | || | ||| | ||| ||| | |||||||| || |||||||||||| Sbjct 2145 CAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTAT 2086 Query 14413 ACATTACCCATATTTC 14428 ||| |||||| || Sbjct 2085 ACAACTGCCATATATC 2070 >seq732 Length=22061 Score = 111 bits (122), Expect = 2e-19 Identities = 286/431 (66%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 |||||||| || || | ||||||||||| |||||| || ||||| || || | | Sbjct 8963 CACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGG 9022 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| | || || || || | |||||| || | |||| || || || || ||||| Sbjct 9023 CCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCG-AGCAGAACGAGCCCGAGAAGAA 9081 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT--TTTTTGTTC 14048 || || || || | ||||| || | | || || | |||| | | || | | || Sbjct 9082 AATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGGGTC 9141 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | ||| || ||||| | | ||| ||| || | | || || ||||| || Sbjct 9142 GCA--CCACTTGAGCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCG 9199 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 | | | |||||||| | | | |||||| || ||||| || | ||| Sbjct 9200 CGCAGAAGGTGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAG 9259 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 | ||| ||||| |||||||| || || ||||| || ||||||||||| | |||||||| | Sbjct 9260 ACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGC 9319 Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 ||| ||||| | ||| | ||||| ||| || || || || |||||||| ||| Sbjct 9320 ACTTGCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCT 9379 Query 14289 GCAAAAAATGC 14299 ||||| || || Sbjct 9380 GCAAAGAAGGC 9390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479655525092400