Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7203 192 6e-44 seq4369 123 2e-23 >seq7203 Length=1522 Score = 192 bits (212), Expect = 6e-44 Identities = 595/905 (66%), Gaps = 33/905 (4%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAA-ACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13370 ||||| || |||| | || ||| ||||| | ||||| | ||| ||||| ||| ||| Sbjct 617 TAAAATTCTTCATCGAGCGAGAAAGACATTTGC-TCTTTCTGAGACATAACACCCGCTTT 675 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||| ||||||| || | |||||| || || || ||||| |||| | || || | || Sbjct 676 TTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAATCATATC 735 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 ||| |||||||| ||||| || | || | | ||||| | |||| | | || | Sbjct 736 CATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATGATTCCAAAAG 795 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| || | ||||||||| ||||| |||||| || |||||| || || | Sbjct 796 GTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAATCAACGA 855 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||| | || ||||| ||||||||||| || || || || || | | ||| Sbjct 856 AACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCTTTCACTA-AAT 914 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTT----TAGATGTT-----TAAAAATTAAACA 13661 | || || | | || | ||| || | |||| || | | ||||| Sbjct 915 CGTAG--ATTTTCTGAG---GGTCATACTTGTTCTGAATGTAATTAGTATATAACAAACA 969 Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13721 ||||| |||| || | ||| ||||| | | ||| | || || || ||||| | || Sbjct 970 GGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGAATGTAAGACC 1029 Query 13722 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATA 13780 ||||| || || |||||||| ||||| ||||| | ||| |||||| || || ||||| | Sbjct 1030 CGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATGAGCCTGAGAAGAAAA 1088 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA 13840 | || || || | ||||| |||| || || || ||| ||| ||| | Sbjct 1089 TACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAAG------TTTCCGTTATCAA 1142 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 |||| |||||| || | |||||| || | | | || || || ||||| | Sbjct 1143 TCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTATGGCATTAA 1202 Query 13901 ATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTA-TACA 13957 | | || ||| || | |||| || | | |||||| || |||| | || Sbjct 1203 GCATTTTATCTCGCTCAACAGGGTCTTTGATAT--AAGAATCAATCAG-AAGCGAGTAAG 1259 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 |||| || || |||||||| || ||||| |||||||| |||||| | ||||| | Sbjct 1260 TTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCTTCGGCAA 1319 Query 14018 ATTGTACCTCCGAG-TAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 ||||||| ||| |||||| | ||||||||||||||||||| ||||||||| ||| Sbjct 1320 ATTGTACACGAGAGATAAAAT-TGACTGCCAAGTTTTCATTAACGATACCATCAGAAGCA 1378 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 |||||||| ||||||| | |||||| | |||| ||| | | || ||| ||| Sbjct 1379 GCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGCTTTCCCAG 1438 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 || |||||| || || |||| ||| || ||||||| || ||| || |||| Sbjct 1439 TCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCTCATGTTTT 1498 Query 14197 TTATA 14201 ||||| Sbjct 1499 TTATA 1503 >seq4369 Length=2652 Score = 123 bits (136), Expect = 2e-23 Identities = 366/557 (66%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 |||||||||||||| | ||| || || | | ||| | ||| || || || || || ||| Sbjct 2617 GCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCT 2558 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 ||||| || || |||||||| |||||| | || | | ||| | || || |||||||| Sbjct 2557 GGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATC 2498 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842 ||||| || || || || || || || || |||| | | | || |||| Sbjct 2497 CCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTCTTC------TATC 2444 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA- 13901 || || ||||||| | ||| || ||| || || || | | |||||| Sbjct 2443 CACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAG-ATTGAAA 2385 Query 13902 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT-AAGTAAGCTATACATTT 13960 ||| | |||| ||| | | ||| ||||||||||| ||| || || | | Sbjct 2384 TAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAG-TAAGTCT 2326 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14020 ||| ||||||||||| || |||||||| ||||| | ||| | || || | | | Sbjct 2325 CAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCT 2266 Query 14021 GTACCTCCGAG-TAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 | ||||| |||||| | | || | ||| ||||| || || ||||| ||| ||| Sbjct 2265 GCACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCA 2207 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14139 || || ||||| || | ||| || | | || |||| || || |||||||||| Sbjct 2206 AAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCC 2147 Query 14140 GCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14199 || || || | || | ||| | ||| ||| | |||||||| || ||||||||||| Sbjct 2146 GCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTA 2087 Query 14200 TACATTACCCATATTTC 14216 |||| |||||| || Sbjct 2086 TACAACTGCCATATATC 2070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478516497197040