Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq7203 192 6e-44
seq4369 123 2e-23
>seq7203
Length=1522
Score = 192 bits (212), Expect = 6e-44
Identities = 595/905 (66%), Gaps = 33/905 (4%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAA-ACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13370
||||| || |||| | || ||| ||||| | ||||| | ||| ||||| ||| |||
Sbjct 617 TAAAATTCTTCATCGAGCGAGAAAGACATTTGC-TCTTTCTGAGACATAACACCCGCTTT 675
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||| ||||||| || | |||||| || || || ||||| |||| | || || | ||
Sbjct 676 TTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAATCATATC 735
Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490
||| |||||||| ||||| || | || | | ||||| | |||| | | || |
Sbjct 736 CATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATGATTCCAAAAG 795
Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550
||| || | ||||||||| ||||| |||||| || |||||| || || |
Sbjct 796 GTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAATCAACGA 855
Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610
||||| | || ||||| ||||||||||| || || || || || | | |||
Sbjct 856 AACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCTTTCACTA-AAT 914
Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTT----TAGATGTT-----TAAAAATTAAACA 13661
| || || | | || | ||| || | |||| || | | |||||
Sbjct 915 CGTAG--ATTTTCTGAG---GGTCATACTTGTTCTGAATGTAATTAGTATATAACAAACA 969
Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13721
||||| |||| || | ||| ||||| | | ||| | || || || ||||| | ||
Sbjct 970 GGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGAATGTAAGACC 1029
Query 13722 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATA 13780
||||| || || |||||||| ||||| ||||| | ||| |||||| || || ||||| |
Sbjct 1030 CGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATGAGCCTGAGAAGAAAA 1088
Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA 13840
| || || || | ||||| |||| || || || ||| ||| ||| |
Sbjct 1089 TACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAAG------TTTCCGTTATCAA 1142
Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900
|||| |||||| || | |||||| || | | | || || || ||||| |
Sbjct 1143 TCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTATGGCATTAA 1202
Query 13901 ATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTA-TACA 13957
| | || ||| || | |||| || | | |||||| || |||| | ||
Sbjct 1203 GCATTTTATCTCGCTCAACAGGGTCTTTGATAT--AAGAATCAATCAG-AAGCGAGTAAG 1259
Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017
|||| || || |||||||| || ||||| |||||||| |||||| | ||||| |
Sbjct 1260 TTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCTTCGGCAA 1319
Query 14018 ATTGTACCTCCGAG-TAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076
||||||| ||| |||||| | ||||||||||||||||||| ||||||||| |||
Sbjct 1320 ATTGTACACGAGAGATAAAAT-TGACTGCCAAGTTTTCATTAACGATACCATCAGAAGCA 1378
Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136
|||||||| ||||||| | |||||| | |||| ||| | | || ||| |||
Sbjct 1379 GCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGCTTTCCCAG 1438
Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196
|| |||||| || || |||| ||| || ||||||| || ||| || ||||
Sbjct 1439 TCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCTCATGTTTT 1498
Query 14197 TTATA 14201
|||||
Sbjct 1499 TTATA 1503
>seq4369
Length=2652
Score = 123 bits (136), Expect = 2e-23
Identities = 366/557 (66%), Gaps = 12/557 (2%)
Strand=Plus/Minus
Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722
|||||||||||||| | ||| || || | | ||| | ||| || || || || || |||
Sbjct 2617 GCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCT 2558
Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782
||||| || || |||||||| |||||| | || | | ||| | || || ||||||||
Sbjct 2557 GGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATC 2498
Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842
||||| || || || || || || || || |||| | | | || ||||
Sbjct 2497 CCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTCTTC------TATC 2444
Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA- 13901
|| || ||||||| | ||| || ||| || || || | | ||||||
Sbjct 2443 CACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAG-ATTGAAA 2385
Query 13902 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT-AAGTAAGCTATACATTT 13960
||| | |||| ||| | | ||| ||||||||||| ||| || || | |
Sbjct 2384 TAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAG-TAAGTCT 2326
Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14020
||| ||||||||||| || |||||||| ||||| | ||| | || || | | |
Sbjct 2325 CAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCT 2266
Query 14021 GTACCTCCGAG-TAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079
| ||||| |||||| | | || | ||| ||||| || || ||||| ||| |||
Sbjct 2265 GCACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCA 2207
Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14139
|| || ||||| || | ||| || | | || |||| || || ||||||||||
Sbjct 2206 AAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCC 2147
Query 14140 GCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14199
|| || || | || | ||| | ||| ||| | |||||||| || |||||||||||
Sbjct 2146 GCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTA 2087
Query 14200 TACATTACCCATATTTC 14216
|||| |||||| ||
Sbjct 2086 TACAACTGCCATATATC 2070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478516497197040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |