Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7203 259 6e-64 seq4369 149 8e-31 seq75 147 3e-30 seq732 140 4e-28 >seq7203 Length=1522 Score = 259 bits (286), Expect = 6e-64 Identities = 626/928 (67%), Gaps = 30/928 (3%) Strand=Plus/Plus Query 41709 TTATGTTTCTTTAAAAGTCAACATCTAA--AGAAAAATGATTG-TCTTCTTGAGACATAA 41765 || ||| |||| |||| || |||| | ||||| | ||| |||| |||||||||| Sbjct 607 TTTTGTATCTT-AAAATTCTTCATCGAGCGAGAAAGACATTTGCTCTTTCTGAGACATAA 665 Query 41766 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATG 41825 | ||| ||||||||||||||| |||||||||||||| ||||| || || |||| || | Sbjct 666 CACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACG 725 Query 41826 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT- 41884 | || | ||||||||||| || |||||||| ||||||||||||| |||| ||| ||| Sbjct 726 AAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATG 785 Query 41885 -TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCAT 41943 | ||| | ||| || | || || || ||| ||| | ||| |||||| Sbjct 786 ATTCCAAA--AGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCAT 843 Query 41944 TCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 42003 || || | ||| || || || |||| | ||||||| ||| || || || || Sbjct 844 GCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATC 903 Query 42004 TGTTA-TAA----TAGATCTTACT--GTTTCTTCACTCG--GTGGATACAATAAATGTTT 42054 | | | ||| ||||| || || | || | ||| | || || ||| | | | | Sbjct 904 TTTCACTAAATCGTAGAT-TTTCTGAGGGTCAT-ACTTGTTCTGAATGTAATTAGTATAT 961 Query 42055 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGA 42114 || |||||| || || || | ||| | || ||||| | | |||||| || || || Sbjct 962 AA----CAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGA 1017 Query 42115 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATC 42173 || || || || ||||||| ||||| ||||| | ||| ||||| || ||| ||||| | Sbjct 1018 GAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGA-GCAGAATGAGC 1076 Query 42174 CAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 42233 | || ||||| || |||||||| | ||||| || ||| | || |||| | | Sbjct 1077 CTGAGAAGAAAATACCTTCTACAACGGCAAATGC--TAACAGGCGGTCAATAA-AGTTTC 1133 Query 42234 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 || || ||||| |||||||||||| || || |||||||| || || |||| Sbjct 1134 CGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTA 1193 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 ||||||||| | | | | ||| | ||||| | ||| | ||| |||| ||| Sbjct 1194 TGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCAGAAGCG 1253 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 || ||||||||||||||||||| || ||||| || || ||||||||| | || | Sbjct 1254 AGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCTT 1313 Query 42414 CGGTAACCTGTACTTCTG-TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 ||| || ||||| | | ||||| | | || || ||||| || || || || ||| Sbjct 1314 CGGCAAATTGTACACGAGAGATAAAATTG-ACTGCCAAGTTTTCATTAACGATACCATCA 1372 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA 42532 || |||||||||||||||||||| ||||||| || | | | | Sbjct 1373 GAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCATCGCTCAGGCTT 1432 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | ||| || || | ||| |||| |||| |||||| | ||||| ||||| || || Sbjct 1433 TCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCAGAATGAAGCCTCA 1492 Query 42593 GCCTTTTTATACATATTCCAGATATCAT 42620 |||||||| | | ||||||||||| Sbjct 1493 TGTTTTTTATAAAATTGCCAGATATCAT 1520 >seq4369 Length=2652 Score = 149 bits (164), Expect = 8e-31 Identities = 396/596 (66%), Gaps = 13/596 (2%) Strand=Plus/Minus Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 ||| ||||| || || | || || || | | ||| ||||| || || || || | || Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 ||||||| ||||| ||||| | |||| | ||||| || | || || ||||| || Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCA 42246 || || || ||| |||||||| || | ||| || | | || || | |||||| Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAAT---GTACCCTCTTCTATCCA 2442 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 ||| | ||||| | || ||||| | || || || |||| | | ||| | Sbjct 2441 CTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAA 2382 Query 42307 ATAGtttttttCATTACT--ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 | | ||||| ||| ||| |||| ||||||||| ||||| ||| || | || Sbjct 2381 CTTGGCCTTTTC--TACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCA 2324 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 | ||| |||||||| || ||||||||||| |||| ||| | ||||| | ||||| Sbjct 2323 GCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGC 2264 Query 42425 ACTTCTGT-ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || ||| | | ||||| |||||| || || || ||||| || || || ||||| Sbjct 2263 ACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAA 2205 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 |||||||| | ||| || |||| | |||| || ||| | |||||||| Sbjct 2204 GAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGC 2145 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 | || | || | ||| | |||||| | |||||||| || ||||| || |||||||| Sbjct 2144 AAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATA 2085 Query 42604 CATATTCCAGATATCATGAT-ATTGAATTGGGA-AAATAACAAATCTATTTGGATT 42657 || | ||| ||||||| || |||| ||||| | | ||||| | || ||||| Sbjct 2084 CAACTGCCATATATCATCATGCTTGA--TGGGATATAGGACAAACCGATCCGGATT 2031 >seq75 Length=61118 Score = 147 bits (162), Expect = 3e-30 Identities = 770/1219 (63%), Gaps = 10/1219 (1%) Strand=Plus/Plus Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGA 71499 || || || || ||||| || |||||||| || || | |||| | ||| ||||| | Sbjct 21102 TAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACGCG 21161 Query 71500 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 || || | |||||||||||| || || | || || || ||||| |||| || | ||| Sbjct 21162 TAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGTGG 21221 Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 | | | || || | |||||||| || || || ||||| | || || | || || Sbjct 21222 CGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGTTC 21281 Query 71620 AGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT 71679 || || | | || || ||| || | || || ||| ||| || ||| Sbjct 21282 AGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGTCT 21341 Query 71680 ATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG-CATC 71738 |||||| | || || || || |||| |||||| || || || |||| | | | Sbjct 21342 TCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCGAC 21401 Query 71739 GGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 71798 | | | | || | |||| ||| | ||||| || ||| || || | || || || Sbjct 21402 GTGA-ACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCTG 21460 Query 71799 ATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 || | ||| | | ||| ||||||||||| || ||||| || || |||||||||| Sbjct 21461 GTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATCT 21519 Query 71858 GAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTT 71916 | | || | ||||| ||| | | || | || || || | ||| | | | | Sbjct 21520 GCGCATCCAAGATCGCAAACCACAGCTGCTGG-GCATTGATCGTCTTCCTCG--CCCGTC 21576 Query 71917 TCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATC 71974 ||||| ||||| | | ||| || || |||||||| ||||| | || | | Sbjct 21577 CCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGCC 21636 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034 | ||| |||||| ||||| | ||| ||||| |||| | | || |||||||| | Sbjct 21637 CTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGA 21696 Query 72035 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 72094 | ||||| || | ||| | || | || | || | | | ||| || || || Sbjct 21697 ATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCAT 21756 Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154 ||| || | |||||| ||| | | | || | ||||||||||||||||| || | Sbjct 21757 GATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCG 21816 Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214 | | ||| |||||| || || ||||| | ||||| || |||| |||| | | Sbjct 21817 CAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAACA 21876 Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 72274 | | | ||| || ||||| || || || | ||||| || || || ||||| Sbjct 21877 CGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAGCTATTCG 21936 Query 72275 TGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 |||| || |||||| || | || || || |||||| ||| || || | || | Sbjct 21937 TGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCAC 21996 Query 72335 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394 || |||| || ||||||||||| || || || |||||| |||| | || ||| | Sbjct 21997 ATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAGC 22056 Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 | ||||| |||| | ||| || || |||||||| | || || | || || |||| Sbjct 22057 ACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTAA 22116 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514 | | || | |||| || | || || || | || | || ||| || ||| | Sbjct 22117 AAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATGGA 22176 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | || | |||||| || | | ||| || || || | ||| |||| || || | Sbjct 22177 TGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGACCC 22236 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 ||||| || | ||| | |||||||| |||||||||| ||| || || || | Sbjct 22237 GAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCGGT 22296 Query 72635 CGTAAATAATAACCGAATT 72653 ||| || || | ||||| Sbjct 22297 CGTGGATGATCGCGGAATT 22315 >seq732 Length=22061 Score = 140 bits (154), Expect = 4e-28 Identities = 384/579 (66%), Gaps = 21/579 (4%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||| |||||||||| |||||| | ||||| || || |||| || ||||| || || Sbjct 8977 GTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 9036 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 ||||| || |||||||| || || ||| || || || || ||||| || ||||| || | Sbjct 9037 GCGCTTCTTCAGCCAAAAGATCGA-GCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCG 9095 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-ACT-----GTCATGTATCCACTTTT 42251 ||||| || | || | ||| | || | ||| ||| | | |||||| Sbjct 9096 AGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGGGTC--GCA-CCACTTGA 9152 Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311 | ||||||| ||| |||||| ||||| || || || || || || | || | | Sbjct 9153 GCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGAT 9212 Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371 || || | ||||||| || || || || | || ||| | ||| || || | Sbjct 9213 CCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGA 9272 Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431 |||||||||| || ||||| || || || || || | || || | || || ||||| Sbjct 9273 TGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCAT 9332 Query 42432 TACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | ||| ||||| || | ||| |||||||| || || |||||||||||||| || || Sbjct 9333 TGCTAAA--GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGC 9390 Query 42490 CAATACATGTTTTATAAA---ATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGAT 42546 | ||||| || ||||| | | | |||| || | || ||| || |||| Sbjct 9391 GAGCACATGCTTGATAAAGTGACGCTCATTGTCC---GTGAGGTTCGCCCAGTCCTTGAG 9447 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 ||| | | |||| || || | ||||| || || ||||| ||||| || ||||| Sbjct 9448 ATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACAT 9507 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 | ||| | || || | ||| || || || | ||||| Sbjct 9508 CTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAAA 9546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671037807645360