Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq732 190 3e-43 seq75 127 3e-24 seq4369 84.2 3e-11 seq248 84.2 3e-11 >seq732 Length=22061 Score = 190 bits (210), Expect = 3e-43 Identities = 600/913 (66%), Gaps = 44/913 (5%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || ||||| ||| | || ||| | ||| | |||||||| ||||| | || || || Sbjct 9540 CTCTTTCCGATCCAAGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAAGCTTCGTTC 9481 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | || ||| | || || | || || | || |||| || | | || Sbjct 9480 TGGACTGCTGAGGAGCTAGACTTGGTGCACGATCTCAAGGACTGGGCGAACC---TCACG 9424 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | |||||| | ||||| ||| | | ||||||||||| | | ||||| || Sbjct 9423 GACAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATT 9364 Query 125175 GTCAACGACAATCTGTTGACACGAT-TCTCTCAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| |||||| | || || | | ||| || || | || || | || Sbjct 9363 GTGAACGAGAATCTG--GCCATGAACTTTAGCAATGAAGTGCAAGTGCCGGAAGCTCGGT 9306 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 ||||||| || ||||| ||| |||||| ||| | ||||||||| | || || || | Sbjct 9305 GCTTTTATGGCTTCCAGATCGCGATTGAAAACATCCACTCGGAAGTCTATTCGCTGCTCA 9246 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCA--ATCGACAC 125350 |||||| ||||||| || || ||| | | || ||| ||| || || || Sbjct 9245 TTGACACGTACATTAAAGAGGCG--ACGGAGAAGGATCACCTTCTGCGCGCGATTGAGAC 9188 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT- 125409 | |||| | | || || || || | |||| | | |||| ||| | |||||| Sbjct 9187 CATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGAC--CCACAAGTA 9130 Query 125410 -CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG- 125467 |||||||||| || | ||| ||||||| ||| | || || ||||| ||||| ||||| Sbjct 9129 TCTTCGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGC 9070 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | ||| ||| | ||||||||||| ||||||||||| |||||||| || || | | Sbjct 9069 TCGTTCTGCT-CGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTC 9011 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587 |||||| | || |||||| |||||| | ||| |||||||| || ||| Sbjct 9010 GAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTC 8951 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGC--GATGAAAAGGTCATCAACATTGTAACC 125645 ||| | |||| | | | || || || ||| || || | | Sbjct 8950 CAAG-----------CTAGTGAACAAGCTGCCCGAGGACCGCGTCCACACGATCATTCGC 8902 Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGG 125704 || || |||| ||| || || |||||| | || || || || || ||| ||||||| Sbjct 8901 GACGCAGTGACGATCGAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGC-TGATTGG 8843 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764 |||||||| ||| |||||| ||||||| |||||||| || || || || ||||| Sbjct 8842 CATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTGTTGTAC-- 8785 Query 125765 GTTGATTGGC----CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 | | | ||| || ||||||| | | || ||||| || ||||| | ||| || | Sbjct 8784 -TCGCTCGGCGTGTCG-AAGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGA 8727 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCTA 125878 | || || |||| ||||| ||||||||||||||| || ||||||| | || ||| Sbjct 8726 TCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGCT- 8668 Query 125879 CGGTGTCGGTGTC 125891 ||||| |||||| Sbjct 8667 -GGTGTAGGTGTC 8656 >seq75 Length=61118 Score = 127 bits (140), Expect = 3e-24 Identities = 370/566 (65%), Gaps = 4/566 (1%) Strand=Plus/Minus Query 96834 CCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGCAATAAACGG 96893 || ||||| | ||| |||| | | |||||||||| || || ||| ||||| Sbjct 21889 CCCATGCTTCGCGTGTTTAATGACACGGCACGATACGTGGATCAAGGTGGCGGCAAACGC 21830 Query 96894 CCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAG 96953 ||| | | || ||||||||||||| |||||||| ||||| ||||| ||| |||| Sbjct 21829 AAAGGATCGTTTGCGATCTACTTGGAACCGTGGCACGCAGACGTGTTTGAGTTTCTCGAT 21770 Query 96954 ATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGG 97013 |||| ||||| |||| |||| || || |||||||||| | ||| | ||| Sbjct 21769 TTGCGGAAAAATCATGGCAATGAACTCCATCGGGCGCGGGACTTGTTCTTTGCGTTGTGG 21710 Query 97014 GTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCC 97073 || || ||| | |||||||| || || | | ||| | ||||| | | || || Sbjct 21709 GTACCCGATCTATTCATGAAACGGGTGGAAGCAAATGGTAAGTGGAGTTTGTTCTGTCCA 21650 Query 97074 GACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCC 97133 | | || || |||| ||| | ||||||||| ||||||||| | ||| Sbjct 21649 AATGAAGCTCCAGGGCTGTACGAGTACTGGGGCGACGAGTTTGAGACTTTGTATGAAAAG 21590 Query 97134 TACGAGCAAGAGGGCCGATACGTG--AGACGAGTCGATGCACGAGAACTGTGGAAGGCCA 97191 ||||| |||||||| || || | |||||| || |||| | | |||||| || | Sbjct 21589 TACGAACAAGAGGGACG-GGCGAGGAAGACGA-TCAATGCCCAGCAGCTGTGGTTTGCGA 21532 Query 97192 TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATC 97251 || || || ||| | || || ||| || | || ||||| |||||| | ||||| | Sbjct 21531 TCTTGGATGCGCAGATTGAAACGGGAGTGCCCTTTATGCTCTATAAGGATGCAGTGAACC 21472 Query 97252 GCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTG 97311 |||| ||||| | || | ||||| ||| | | || ||||| ||| | Sbjct 21471 GCAAATCGAACCAGCAGAACCTTGGCACGATCCGGTCCAGTAACTTGTGCTGTGAAGTGA 21412 Query 97312 TAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCA 97371 | |||| | | || ||||| || ||| || || | |||| ||||| ||||||| Sbjct 21411 TGGAGTTCACGTCGCCGGATGAAGTGGCGGTGTGTAATTTGGCGTCGGTAGCGCTGCCCA 21352 Query 97372 AGTTTGTAGAGGGTAAAGTGTTTAAT 97397 ||||||| || | ||||||||| Sbjct 21351 AGTTTGTTGAAGACGGCGTGTTTAAT 21326 Score = 91.5 bits (100), Expect = 2e-13 Identities = 289/437 (66%), Gaps = 12/437 (3%) Strand=Plus/Minus Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844 |||||| |||| ||||| || ||||| |||||| | || |||| | | ||||| Sbjct 20926 AACTCTCTGCTCGTGGCGCCAATGCCGACGGCTTCGACGGCCCAGATTCTGGGCAACAAC 20867 Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 || || |||| |||| |||||| || |||||| | | ||| | | |||| |||||| Sbjct 20866 GAGTCGATTGAGCCGTACACGTCGAATATGTACAACCGCCGCGTGCTGGCTGGCGAGTTT 20807 Query 97905 -CAATTGACCAACGTGCACTTGGTTCGAGACTTG---GAACGGCTCAATCTGTG-GAACG 97959 | |||| ||| | || || | || ||| || | | || |||| | || Sbjct 20806 ACGATTGTA-AACAAGTACCTGATGAAGGAATTGATTGACCTGGGCA-TCTGGACGCCCG 20749 Query 97960 ATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCC 98019 | | | ||| | || || || || ||| ||| | ||||| ||| | ||||| Sbjct 20748 AAGTCCGCAACCAAAT--TC-TGAACGACGGTGGCTCCGTGCAAAAGGTTAAGACCATCC 20692 Query 98020 CGGAAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATC 98078 || | || || | | || |||||||| || ||||| ||| | ||| || | | Sbjct 20691 CGAATGATGTCAAGGAAAAG-TACAAGACAGTGTGGGAAATTAAGCAGAAGTCGATCTTG 20633 Query 98079 GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTT 98138 ||| | | || || | || | |||||| |||||| || ||| ||||| | | || Sbjct 20632 GATCTCTCGGCTGATCGTGGCGCGTACATTTGCCAGAGCCAGTCGCTCAATATTCATATT 20573 Query 98139 GCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTC 98198 || || || || |||| |||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 20572 GCGGATCCGACGATCAGTAAGCTGACGTCGATGCACTTTTACGCGTGGAAGAAGGGGCTC 20513 Query 98199 AAGACGGGCATGTACTA 98215 |||||||| ||||| || Sbjct 20512 AAGACGGGTATGTATTA 20496 >seq4369 Length=2652 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/196 (70%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| | |||||||| | || |||| || ||| | |||| ||||| ||| | || ||||| Sbjct 2048 CCTATATCCCATCAAGCATGATGATATATGGCAGTTGTATAAAAAAGCTGAAGCGTCCTT 2107 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||| | ||||| | ||| ||||| | ||| | |||||| | | | | | Sbjct 2108 TTGGACTGCTGAAGAAATTGATTTGTCCGATGACTTTGCGGATTGGAAAA---GGCTAAA 2164 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCT-CCGATGGAA 125172 ||| ||| || | || || ||||| |||||||| ||||||| ||||| | ||||| | Sbjct 2165 TGATGATGAAAGACATTTCATTTCGCATATTTTGGCGTTCTTTG-CGGCTGCGGATGGGA 2223 Query 125173 TCGTCAACGACAATCT 125188 | || || || || || Sbjct 2224 TAGTAAATGAGAACCT 2239 >seq248 Length=62954 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 127444 AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT 127503 || |||||||||| |||||| || ||||| ||||| |||||||| | ||||||| Sbjct 28159 AAGCCGTGCGTCAAGTGGCCGCCACTGGGCAAGTCGAGGCCCATGATGCGGTCGTGCGGA 28218 Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTAC 127559 | || | ||||| |||||||||||||| ||||||||||||||| || || Sbjct 28219 CGCAGGAGCGCCGTGTAGACGGCAAAGTTGGCTGGCGAGCCCGAGTACGGCTGCAC 28274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740947244481360