Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_004629.1
Length=280334
Score E
Sequences producing significant alignments: (Bits) Value
seq1161 111 3e-19
seq6661 100 5e-16
>seq1161
Length=14925
Score = 111 bits (122), Expect = 3e-19
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326
||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 13546 AAACTGGTCGGCGTGGAGAGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 13487
Query 273327 ACCA-ACTGCGCTACACTCCG 273346
|||| ||| |||||||| |||
Sbjct 13486 ACCAGACTACGCTACACGCCG 13466
>seq6661
Length=1649
Score = 100 bits (110), Expect = 5e-16
Identities = 69/77 (90%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931
||||||||||||| ||||||||||| |||||||| || ||||||| || |||||||||||
Sbjct 239 TGGTGGGCCCAGCTGGACTTGAACCAGCGACCAATCGGTTATGAGCCGACTGCTCTAACC 298
Query 272932 AACTGAGCTATAGGCCC 272948
|||||||||| |||||
Sbjct 299 -ACTGAGCTATGGGCCC 314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 896805294668640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |