Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq1161 111 3e-19 seq6661 100 5e-16 >seq1161 Length=14925 Score = 111 bits (122), Expect = 3e-19 Identities = 74/81 (91%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 ||| ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 13546 AAACTGGTCGGCGTGGAGAGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 13487 Query 273327 ACCA-ACTGCGCTACACTCCG 273346 |||| ||| |||||||| ||| Sbjct 13486 ACCAGACTACGCTACACGCCG 13466 >seq6661 Length=1649 Score = 100 bits (110), Expect = 5e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 ||||||||||||| ||||||||||| |||||||| || ||||||| || ||||||||||| Sbjct 239 TGGTGGGCCCAGCTGGACTTGAACCAGCGACCAATCGGTTATGAGCCGACTGCTCTAACC 298 Query 272932 AACTGAGCTATAGGCCC 272948 |||||||||| ||||| Sbjct 299 -ACTGAGCTATGGGCCC 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896805294668640