Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq6992 134 3e-27 seq6336 107 4e-19 >seq6992 Length=1569 Score = 134 bits (148), Expect = 3e-27 Identities = 232/332 (70%), Gaps = 9/332 (3%) Strand=Plus/Minus Query 17051 GATACGGTTACCAGTACCACCGCCACCGCGTATGCCACCGCTCGTGCGCTGGGTCTGCGC 17110 || || | |||||| ||||| | | || |||||||| || |||||||| || ||||| Sbjct 1566 GACACCGCTACCAGCACCACGACGGCGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGT 1507 Query 17111 GCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGT 17170 || || |||||| || ||||||||||| || | ||||||||||| ||| || Sbjct 1506 GCCAAGATCGACACCGAACAGGGCTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGC 1447 Query 17171 GTTACCGGCATCAGTGCATCCGTCTTC--TGGGATTTGCAGAAGCCAGGCACTGATGCTG 17228 || ||||||||| | || | | | |||||| ||||| | || | ||| ||||| | Sbjct 1446 GTCACCGGCATC--TCCAAGGATGTGCATTGGGATCTGCAGGATCCGGCCACCGATGCCG 1389 Query 17229 ACCTGCTGAACGAGGCAGGCGTCACAACGCTGGTTCGCCG--CGACGGTTTTCGTTTCTG 17286 | | || ||||||| | | |||| |||||||| | || | |||| || ||||| Sbjct 1388 GCATCCTCAACGAGGGCGACATCACCACGCTGGT--GACGTTCAACGGCCAGCGCTTCTG 1331 Query 17287 GGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAGCTACACACGCACCGC 17346 ||| || || ||| | || ||| ||||| ||| || | ||| |||||||| Sbjct 1330 GGGATCGCGCACGTGCGCGGAGGACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGC 1271 Query 17347 GCAGGTACTGGCCGACACGATGGCTG-AGGCG 17377 |||| | ||||||||||| || || | ||||| Sbjct 1270 GCAGATCCTGGCCGACACCATCGCCGAAGGCG 1239 >seq6336 Length=1727 Score = 107 bits (118), Expect = 4e-19 Identities = 164/228 (72%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 3349 TATGGCGATGTGGCCGAACTGAAGGCCGAAAAGATTGACGAT-GATTCGGCGCTGAAAGG 3407 ||||||||||| | | | |||| |||||| || | || ||| ||| ||| | || | Sbjct 430 TATGGCGATGTCACTGCAGTGAAAGCCGAAGAGGTCGA-GATCGAT--GGCAC-CAAGCG 375 Query 3408 CAAATGGGCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGC 3467 | |||||||||||| | ||| ||||||| ||||| ||| | || |||||| | Sbjct 374 C---CTGGCGCTGTTTGCCCAGATCGAGCCGACCGCCGACCTGATCACCATCAACAAGTC 318 Query 3468 CGCGCAGAAGGTCTACACCTCAATGGAAATTCAGCCGAACTTTGCCAACACCGGCAAATG 3527 | ||||||| |||||||| || || | ||| ||| || |||||||||||||| Sbjct 317 CAAGCAGAAGCTCTACACCAGCATCGAGGTGCAGGAGAAATTCGCCAACACCGGCAAGGC 258 Query 3528 TTATCTGGTGGGGCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCAC 3575 ||||| || || ||||| |||||||| ||||| ||||| ||||| Sbjct 257 GTATCTCGTCGGCCTGGCGGTCACCGACTCGCCGGCCAGCCTGGGCAC 210 Score = 80.6 bits (88), Expect = 5e-11 Identities = 107/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 2645 GTTGCGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGACT--GTAGCGG 2702 |||||| || ||||| |||||| || || || ||||||||| | | || |||||| Sbjct 1112 GTTGCGATTGGCGACAGCCGGATTCAGATCGGCTTCGTTGCCG--CCGCCTTGGTAGCGC 1055 Query 2703 TTGACCCGTGCCAGTCGTTCAATCTGGCGTCCCAGCAGGTCAATTTCCTTGAAGTCACCG 2762 | || || ||| | || || | ||| || |||||| |||||||||||||| || ||| Sbjct 1054 TGGATGCGCGCCTGGCGCTCCAACTGCCGATGCAGCAGATCAATTTCCTTGAAATCGCCG 995 Query 2763 CCGGTTTTCTGCGGTTTGATGATGAGC 2789 |||| || | ||| || || || ||| Sbjct 994 CCGGACTTTTCCGGCTTCATAATCAGC 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98193905065080