Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_005056.1
Length=32684
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 131 4e-26
seq6336 104 5e-18
>seq6992
Length=1569
Score = 131 bits (144), Expect = 4e-26
Identities = 225/321 (70%), Gaps = 7/321 (2%)
Strand=Plus/Minus
Query 16431 CCAGTACCACCGCCACCGCGTATGCCACCGCCCGTGCGCTGGGTCTGCGCGCTAAAATCG 16490
|||| ||||| | | || |||||||| || |||||||| || ||||| || || ||||
Sbjct 1556 CCAGCACCACGACGGCGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCG 1497
Query 16491 ACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACCGGCA 16550
|| || ||||||||||| || | ||||||||||| ||| || || |||||||
Sbjct 1496 ACACCGAACAGGGCTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCA 1437
Query 16551 TCAGCGCGTCCGTATTCTGGGATTTGCAGGAGTCCGG-CACCGATGCTGACCTGCTTAAC 16609
|| | | || |||||| ||||||| ||||| ||||||||| | | | || |||
Sbjct 1436 TCTCCAAGGATGTGCATTGGGATCTGCAGGA-TCCGGCCACCGATGCCGGCATCCTCAAC 1378
Query 16610 GAGTCAGGCGTCACAACGCTGATTCGCCGT--GACGGTTTCCGCTTCTGGGGTAACCGTA 16667
||| | | |||| |||||| | | ||| |||| ||||||||||| || |
Sbjct 1377 GAGGGCGACATCACCACGCTGGT--GACGTTCAACGGCCAGCGCTTCTGGGGATCGCGCA 1320
Query 16668 CCTGCTCTGATGATCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGCTGG 16727
| ||| | || || ||||| ||| || | ||| |||||||||||| | ||||
Sbjct 1319 CGTGCGCGGAGGACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGG 1260
Query 16728 CCGACACGATGGCTG-AGGCG 16747
||||||| || || | |||||
Sbjct 1259 CCGACACCATCGCCGAAGGCG 1239
>seq6336
Length=1727
Score = 104 bits (114), Expect = 5e-18
Identities = 163/228 (71%), Gaps = 8/228 (4%)
Strand=Plus/Minus
Query 3348 TATGGCGATGTGGCCGAACTGAAGGCCGAAAAGATTGACGAT-GATTCGGCGCTGAAAGG 3406
||||||||||| | | | |||| |||||| || | || ||| ||| ||| | || |
Sbjct 430 TATGGCGATGTCACTGCAGTGAAAGCCGAAGAGGTCGA-GATCGAT--GGCAC-CAAGCG 375
Query 3407 CAAATGGGCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGC 3466
| |||||||||||| | ||| ||||||| ||||| ||| | || |||||| |
Sbjct 374 C---CTGGCGCTGTTTGCCCAGATCGAGCCGACCGCCGACCTGATCACCATCAACAAGTC 318
Query 3467 CGCGCAGAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTTGCCAACACCGGCAAATG 3526
| ||||||| |||| ||| || || | ||| ||| || ||||||||||||||
Sbjct 317 CAAGCAGAAGCTCTACACCAGCATCGAGGTGCAGGAGAAATTCGCCAACACCGGCAAGGC 258
Query 3527 TTATCTGGTGGGGCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCAC 3574
||||| || || ||||| |||||||| ||||| ||||| |||||
Sbjct 257 GTATCTCGTCGGCCTGGCGGTCACCGACTCGCCGGCCAGCCTGGGCAC 210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104452206736872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |