Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq6992 131 4e-26 seq6336 104 5e-18 >seq6992 Length=1569 Score = 131 bits (144), Expect = 4e-26 Identities = 225/321 (70%), Gaps = 7/321 (2%) Strand=Plus/Minus Query 16431 CCAGTACCACCGCCACCGCGTATGCCACCGCCCGTGCGCTGGGTCTGCGCGCTAAAATCG 16490 |||| ||||| | | || |||||||| || |||||||| || ||||| || || |||| Sbjct 1556 CCAGCACCACGACGGCGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCG 1497 Query 16491 ACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACCGGCA 16550 || || ||||||||||| || | ||||||||||| ||| || || ||||||| Sbjct 1496 ACACCGAACAGGGCTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCA 1437 Query 16551 TCAGCGCGTCCGTATTCTGGGATTTGCAGGAGTCCGG-CACCGATGCTGACCTGCTTAAC 16609 || | | || |||||| ||||||| ||||| ||||||||| | | | || ||| Sbjct 1436 TCTCCAAGGATGTGCATTGGGATCTGCAGGA-TCCGGCCACCGATGCCGGCATCCTCAAC 1378 Query 16610 GAGTCAGGCGTCACAACGCTGATTCGCCGT--GACGGTTTCCGCTTCTGGGGTAACCGTA 16667 ||| | | |||| |||||| | | ||| |||| ||||||||||| || | Sbjct 1377 GAGGGCGACATCACCACGCTGGT--GACGTTCAACGGCCAGCGCTTCTGGGGATCGCGCA 1320 Query 16668 CCTGCTCTGATGATCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGCTGG 16727 | ||| | || || ||||| ||| || | ||| |||||||||||| | |||| Sbjct 1319 CGTGCGCGGAGGACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGG 1260 Query 16728 CCGACACGATGGCTG-AGGCG 16747 ||||||| || || | ||||| Sbjct 1259 CCGACACCATCGCCGAAGGCG 1239 >seq6336 Length=1727 Score = 104 bits (114), Expect = 5e-18 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 3348 TATGGCGATGTGGCCGAACTGAAGGCCGAAAAGATTGACGAT-GATTCGGCGCTGAAAGG 3406 ||||||||||| | | | |||| |||||| || | || ||| ||| ||| | || | Sbjct 430 TATGGCGATGTCACTGCAGTGAAAGCCGAAGAGGTCGA-GATCGAT--GGCAC-CAAGCG 375 Query 3407 CAAATGGGCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGC 3466 | |||||||||||| | ||| ||||||| ||||| ||| | || |||||| | Sbjct 374 C---CTGGCGCTGTTTGCCCAGATCGAGCCGACCGCCGACCTGATCACCATCAACAAGTC 318 Query 3467 CGCGCAGAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTTGCCAACACCGGCAAATG 3526 | ||||||| |||| ||| || || | ||| ||| || |||||||||||||| Sbjct 317 CAAGCAGAAGCTCTACACCAGCATCGAGGTGCAGGAGAAATTCGCCAACACCGGCAAGGC 258 Query 3527 TTATCTGGTGGGGCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCAC 3574 ||||| || || ||||| |||||||| ||||| ||||| ||||| Sbjct 257 GTATCTCGTCGGCCTGGCGGTCACCGACTCGCCGGCCAGCCTGGGCAC 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104452206736872