Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1324 84.2 2e-11 >seq1324 Length=13147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || |||| ||| || || ||||| |||| || |||||||| |||| | ||||| ||| Sbjct 2139 TCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTA 2198 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || ||| || || || || | ||| | || | ||||||||| || | ||| || Sbjct 2199 TCCTGAATCTTCTGCTTCACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATC 2258 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || || || ||||||||||| || |||||| Sbjct 2259 GTCTTGCCTGTCAACGTCTTCACAAAGATCTGCATG 2294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354725341924728