Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7203 208 7e-49 >seq7203 Length=1522 Score = 208 bits (230), Expect = 7e-49 Identities = 513/764 (67%), Gaps = 27/764 (4%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||| | |||||| ||||| | || | |||||| || || || ||||| ||| Sbjct 659 GACATAACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCT 718 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | ||||||||| | ||||| |||||||||||||| ||| | ||| ||| ||| Sbjct 719 TGTAACGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACT 778 Query 12965 CCTAATTCTAGTAACAATCTG-TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACA 13023 |||||| | || || || || || |||||||| ||||| || ||||| || Sbjct 779 CCTAATGATTCCAA-AAGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGC 837 Query 13024 GTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083 ||||| || || || ||||| | || || |||| || | |||||| || || || Sbjct 838 ATTCATGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTAC 897 Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCT----CTAATGGAGGATTTGATAG--ATG 13137 ||| || | |||| || ||| |||| | || | | ||| | || Sbjct 898 TGCATCTTTCACTAAATCGTAGATT---TTCTGAGGGTCATACTTGTTCTGAATGTAATT 954 Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 || | | || ||| ||||| |||| ||| || |||||||| | | |||| ||| || Sbjct 955 AGTATATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATT 1014 Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACG 13256 || ||||| ||||||||||| | || |||||||| | ||| ||||| | |||| || | Sbjct 1015 AGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATG 1073 Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTAC 13316 | || || || || || ||||| || | ||||| |||| || | ||| ||| Sbjct 1074 AGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCA--ATA----- 1126 Query 13317 TATTTTTAC--TCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 | ||| | | || ||||| ||||| | ||||||| || || || || Sbjct 1127 -AAGTTTCCGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAAT 1185 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 || ||||| || |||| | | || | || | |||| ||||||| ||| || Sbjct 1186 ATGGTCTATGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAAT 1245 Query 13435 CAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAAC 13493 | | |||| | || ||||||||||||| ||||||||| || ||||||||||| |||| Sbjct 1246 C-AGAAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAAC 1304 Query 13494 ATCTAGCCTCTGATACCTGAACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACT 13552 || | || || | | || || ||| |||||| | |||| |||||||| ||||| Sbjct 1305 ATTTTGCTTCGGCAAATTGTACACGAGAGATAAAAT-TGACTGCCAAGTTTTCATTAACG 1363 Query 13553 ATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 || || ||| |||||||||||| || | || || |||||| Sbjct 1364 ATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAA 1407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430918917100572