Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_005260.1
Length=233234
Score E
Sequences producing significant alignments: (Bits) Value
seq7821 109 8e-19
seq5177 105 1e-17
>seq7821
Length=1406
Score = 109 bits (120), Expect = 8e-19
Identities = 219/312 (70%), Gaps = 16/312 (5%)
Strand=Plus/Plus
Query 41661 GTATTTGCACTAATCATTTGATCCACAAACTTCTGCATGATAGCTACAATGTCCAAG-TA 41719
|| || ||| |||| || || ||||||||||||||||| | || | ||| || ||
Sbjct 515 GTGTTGGCAGAAATCGACTGGTCGACAAACTTCTGCATGATGCCCACCA-GTCTGAGGTA 573
Query 41720 ACCCTTCATGCCGTGTTTGGTCATCTGCCA-AGCTGTCTCATACTCGCTACCAAGCATGT 41778
||||| ||| ||||||| ||| | ||| ||| || |||| | || || ||
Sbjct 574 ACCCT-CAT----TGTTTGG-CATTTTCCACAGCAA-CTGGTACTGGTCACGCAGGCGGT 626
Query 41779 CTACCTCAGGCACTAGCTGATTAAAGACACCATCTTTCGATTGCTTGGTGCTCACTAGGC 41838
| | ||||||||||| ||| | || ||| ||||| ||||||||| | || ||||
Sbjct 627 CGATCTCAGGCACTACCTGGCGCAGGATACCGTCTTTGGATTGCTTGACGGATACCAGGC 686
Query 41839 CGCGCGGTGGCTCGATACCGTTTGTGCTGTTGGTGATCTG--TGAACTACTCTCACAAGG 41896
|||||||||| || ||||| || ||| ||||| |||||| || | | || | ||
Sbjct 687 CGCGCGGTGGTTCAATACCATTGGTGGCGTTGGCGATCTGGCTGGA--GGTTTCTGATGG 744
Query 41897 CATAAATGCGCTTAGAGTATCGTTTCGCAGGCCGTGCTGTTTG-ATCTCAGCTCGCAGCC 41955
||| || || | || || ||| |||||||| | || |||| ||||| | ||||| |
Sbjct 745 CATTAACGCAGTCAGGGTGGAGTTGCGCAGGCCAT-CTTTTTGAATCTCGGTACGCAGGC 803
Query 41956 ATTCCCAATCCA 41967
|||||||||||
Sbjct 804 TTTCCCAATCCA 815
>seq5177
Length=2144
Score = 105 bits (116), Expect = 1e-17
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 40715 CTGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTT 40774
||||||||| ||||||| || |||||| ||||||||||| || |||||||| |||||
Sbjct 702 CTGGGTGCCGGTCAGGTGCAGGGCTTCATCACGCGCAATCAGGCGGATGATCTTGGCGTT 643
Query 40775 GCCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACG 40834
||||||||| | ||||| | || | ||| | ||| || ||||| || ||||| ||
Sbjct 642 GCCTTCCATCACCTTGCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCG 583
Query 40835 AATCGCTTCCA 40845
||||||||||
Sbjct 582 GATCGCTTCCA 572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 746108064692640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |