Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq7821 109 8e-19 seq5177 105 1e-17 >seq7821 Length=1406 Score = 109 bits (120), Expect = 8e-19 Identities = 219/312 (70%), Gaps = 16/312 (5%) Strand=Plus/Plus Query 41661 GTATTTGCACTAATCATTTGATCCACAAACTTCTGCATGATAGCTACAATGTCCAAG-TA 41719 || || ||| |||| || || ||||||||||||||||| | || | ||| || || Sbjct 515 GTGTTGGCAGAAATCGACTGGTCGACAAACTTCTGCATGATGCCCACCA-GTCTGAGGTA 573 Query 41720 ACCCTTCATGCCGTGTTTGGTCATCTGCCA-AGCTGTCTCATACTCGCTACCAAGCATGT 41778 ||||| ||| ||||||| ||| | ||| ||| || |||| | || || || Sbjct 574 ACCCT-CAT----TGTTTGG-CATTTTCCACAGCAA-CTGGTACTGGTCACGCAGGCGGT 626 Query 41779 CTACCTCAGGCACTAGCTGATTAAAGACACCATCTTTCGATTGCTTGGTGCTCACTAGGC 41838 | | ||||||||||| ||| | || ||| ||||| ||||||||| | || |||| Sbjct 627 CGATCTCAGGCACTACCTGGCGCAGGATACCGTCTTTGGATTGCTTGACGGATACCAGGC 686 Query 41839 CGCGCGGTGGCTCGATACCGTTTGTGCTGTTGGTGATCTG--TGAACTACTCTCACAAGG 41896 |||||||||| || ||||| || ||| ||||| |||||| || | | || | || Sbjct 687 CGCGCGGTGGTTCAATACCATTGGTGGCGTTGGCGATCTGGCTGGA--GGTTTCTGATGG 744 Query 41897 CATAAATGCGCTTAGAGTATCGTTTCGCAGGCCGTGCTGTTTG-ATCTCAGCTCGCAGCC 41955 ||| || || | || || ||| |||||||| | || |||| ||||| | ||||| | Sbjct 745 CATTAACGCAGTCAGGGTGGAGTTGCGCAGGCCAT-CTTTTTGAATCTCGGTACGCAGGC 803 Query 41956 ATTCCCAATCCA 41967 ||||||||||| Sbjct 804 TTTCCCAATCCA 815 >seq5177 Length=2144 Score = 105 bits (116), Expect = 1e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 40715 CTGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTT 40774 ||||||||| ||||||| || |||||| ||||||||||| || |||||||| ||||| Sbjct 702 CTGGGTGCCGGTCAGGTGCAGGGCTTCATCACGCGCAATCAGGCGGATGATCTTGGCGTT 643 Query 40775 GCCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACG 40834 ||||||||| | ||||| | || | ||| | ||| || ||||| || ||||| || Sbjct 642 GCCTTCCATCACCTTGCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCG 583 Query 40835 AATCGCTTCCA 40845 |||||||||| Sbjct 582 GATCGCTTCCA 572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746108064692640