Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7203 152 1e-31 seq2192 131 4e-25 seq1324 118 2e-21 >seq7203 Length=1522 Score = 152 bits (168), Expect = 1e-31 Identities = 527/805 (65%), Gaps = 23/805 (3%) Strand=Plus/Minus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 ||||| ||| || | | ||||||||||| | | ||||||||||||||| ||||| | Sbjct 1407 TTTATTTCTCATGTATTGGCGTTTTTTGCTGCTTCTGATGGTATCGTTAATGAAAACTTG 1348 Query 268901 GTAGAGAAGTTC-TGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCA 268959 | || || || | || | | |||| || | ||||| | |||||| || || ||||| Sbjct 1347 GCAGTCAATTTTATCTCTCGTG-TACAATTTGCCGAAGCAAAATGTTTCTATGGTTTCCA 1289 Query 268960 GATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGA 269019 ||| || ||||| ||||||||||| | ||| || | || ||| ||||||| | Sbjct 1288 GATTATGATGGAAAACATTCATTCAGAAACTTACTCGCTTCTGATTGATTCTTATATCAA 1229 Query 269020 TGATAACAACGAAA-AGAAAAGACTATTTTCTTCTATGAGAAC-TATGGACTGTGTGAGa 269077 || || ||| || | | || | | || ||| | ||| ||||| | Sbjct 1228 AGACCCTGTTGAGCGAGATAAAA-TGCTTAATGCCAT-AGACCATATTCCGTGTGTAAAG 1171 Query 269078 aaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCG--CCTTACGGAGAAAGGT 269135 |||||| | || |||||| || ||||| |||| || | ||| || | Sbjct 1170 AAAAAAGCCGATTGGGCTTTGCGTTGGATT---GATAACGGAAACTTTATTGACC--GCC 1116 Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 | | || ||||||| |||||||||||| ||||| || || || || | | || || | Sbjct 1115 TGTTAGCATTTGCCGTTGTAGAAGGTATTTTCTTCTCAGGCTCATTCTGCTCGATATTCT 1056 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 ||||||| ||| | || | ||||| || | || |||||||| || || || | | Sbjct 1055 GGTTGAAAAAACGTGGTTTAATGCCGGGTCTTACATTCTCTAATGAGTTAATTTCTCGTG 996 Query 269256 ACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCA-CACAAA 269314 | ||||| |||||| | ||||| || ||||| |||| ||||||||| | |||| |||| Sbjct 995 ATGAAGGCTTACACCGTGACTTTGCCTGTTTGTTATATACTAATTA-CATTCAGAACAAG 937 Query 269315 CCTTCTCAAGATAGAGTATACGA---AATTATAGATTCAGCTGTTTCTGTAGAAACAGAA 269371 | | | | | | ||||| | | | |||| || || | |||| |||| Sbjct 936 TATGACCCTCAGAAAATCTACGATTTAGTGAAAGAT---GCAGTAGAAATCGAAAAAGAA 880 Query 269372 TTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAA 269431 || |||| || || ||| || | | || || |||||| | || ||| || Sbjct 879 TTCGTAACTGATGCGCTACCTGTTTCGTTGATTGGCATGAATGCCGAACTAATGTGCCAA 820 Query 269432 TATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAAC 269491 || ||| |||| || | ||| | ||| || ||||| ||| ||||| ||||| Sbjct 819 TACATTGAGTTTGTGGCCGATCACCTTTTGGAATCATTAGGAGTTAATAAAATTTATAAT 760 Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 | ||||| || ||| ||||| | || || ||| |||| || | ||||||||| Sbjct 759 GCGACCAATCCTTTCGATTTCATGGATATGATTTCGTTACAAGGCAAAACCAATTTCTTC 700 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATAT- 269610 || || || ||| || | || || ||| |||||| |||||| |||| || |||| | Sbjct 699 GAAAAACGTGTAGGTGAATACCAAAAAGCGGGTGTTATGTCTCAGAAAG-AGCAAATGTC 641 Query 269611 TTTCACTACAGATGCAGAATTCTAA 269635 |||| | |||| |||||| ||| Sbjct 640 TTTCTCGCTCGATGAAGAATTTTAA 616 >seq2192 Length=7014 Score = 131 bits (144), Expect = 4e-25 Identities = 294/442 (67%), Gaps = 0/442 (0%) Strand=Plus/Minus Query 238406 ATTTTTAGACGAAATCATCATAAGACGTGAACTAGCTGATAATTTTTGCTATTATAATAA 238465 |||||| || || | ||| | ||||| || |||||||| || |||||||| || ||| Sbjct 6894 ATTTTTGGAAGAGCTTATCGTGAGACGAGAGCTAGCTGACAACTTTTGCTACTACAATCC 6835 Query 238466 AAGATATGATTCTATAGAATCCACACATTCATGGGCACGAGAAACATTAGAAGCACACGT 238525 |||||| | | || | |||||||| | | ||| || | || | Sbjct 6834 TCATTATGATAGTTTTGAGGGATTTCCGGCATGGGCAAAAAAGACACTACTCGAGCATAT 6775 Query 238526 AAATGATAGAAGAAAATATATTTACTCTTTAAAACAGCTCGAGAGAGCCGAAACTCACGA 238585 | |||| |||| | || | || ||| || | |||| ||| | || || || Sbjct 6774 AGATGACCCAAGATCACATCTGTATTCTCAGGAAGAATTCGAAGCAGCAAAGACGCATGA 6715 Query 238586 TCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTT 238645 ||| || |||||| || | ||| | | ||||||| || |||||| |||||| | | | Sbjct 6714 TCCTCTGTGGAATGCCACTCAGCTGGAGATGGTAAAACGAGGCAAGATGCATGGCTATAT 6655 Query 238646 ACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAG 238705 ||| ||||| ||||| || || | | |||||||| | | |||| ||| || ||| | Sbjct 6654 ACGTATGTACTGGGCGAAGAAACTTTTGGAATGGACCAAAACTCCGGAGGTCGCCCTTCG 6595 Query 238706 ATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGT 238765 | || ||||| || ||||||||||| || || ||| |||||| || ||||| || Sbjct 6594 CATCGGGATATATCTCAATGATAAATACGAGCTAGATGGTCGGGATCCCAATGGATATGT 6535 Query 238766 AGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATT 238825 || | ||||| ||| | || | |||||||| || |||| |||| | | |||| Sbjct 6534 GGGCTTAGCATGGTCTATAGGAGGCGTGCACGATAGAGCTTGGTTTGAGCGGGATGTATT 6475 Query 238826 TGGAAAAGTTAGATACATGAAT 238847 |||||| | | ||||||||| Sbjct 6474 CGGAAAAATCCGCTACATGAAT 6453 >seq1324 Length=13147 Score = 118 bits (130), Expect = 2e-21 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || || || ||||| || || || | ||||||||| ||||| || || ||||| || Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTC 104490 || | ||| || |||||||| || ||||| |||||||||||||| ||| || ||||| || Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGC-TTCACATTGTC 2224 Query 104491 TACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | | | ||| || || || || || || || ||||| || || | || || ||||| Sbjct 2225 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAA 2284 Query 104551 TATCTGCAT 104559 |||||||| Sbjct 2285 GATCTGCAT 2293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151220103798888