Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_005340.1
Length=30636
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 188 1e-43
>seq6992
Length=1569
Score = 188 bits (208), Expect = 1e-43
Identities = 634/967 (66%), Gaps = 54/967 (6%)
Strand=Plus/Minus
Query 15500 CGGCTTACGCCACTGCGCGTGCACTCGGCCTGCGTGCTTACATCG--ACCAGACTGTCGG 15557
|||| || |||||||||||||| |||||||||||||| | |||| ||| || | ||
Sbjct 1541 CGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCGACACCGAACAG--GG 1484
Query 15558 CTGGCACAAAACCCTGTCTAACGTTGGTGTACAGGGCGTTACCGGCATCAGCGCCTCAGT 15617
||||||||| | |||||| ||||| || ||||| ||||||||| | ||
Sbjct 1483 CTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCATCTCCAAGGATGT 1424
Query 15618 GTTCTGGGATTTGCAGGCATCCGG-CACCGATGCTGACCTGCTCAACGAGGCCGGGGTTA 15676
| |||||| |||||| |||||| ||||||||| | | | |||||||||| || | |
Sbjct 1423 GCATTGGGATCTGCAGG-ATCCGGCCACCGATGCCGGCATCCTCAACGAGGGCGACATCA 1365
Query 15677 CAACGCTGGT-ACG--CAAGGACGGTTTCCGCTTCTGGGGTAACCGCACCTGCTCGGATG 15733
| |||||||| ||| || |||| ||||||||||| ||||| ||| |||| |
Sbjct 1364 CCACGCTGGTGACGTTCA---ACGGCCAGCGCTTCTGGGGATCGCGCACGTGCGCGGAGG 1308
Query 15734 ACCCGCTTTTTCTGTTTGAGAACTACACTCGCACCGCGCAGGTACTGGCCGACACGATGG 15793
|| | || || |||| ||| |||||||||||| | ||||||||||| || |
Sbjct 1307 ACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATCG 1248
Query 15794 CCG-AGGCGCACATGTGGGCGGTCGACAAGCCCATTACCGCCACGCTCATTCGTGACATT 15852
||| ||||| || |||||||| || || | || |||| | | || |
Sbjct 1247 CCGAAGGCG-TGGCGTTCTACGTCGACAAACCGATGCACCCCTCGCTGGTCAGGGATCTG 1189
Query 15853 GTTGACGGCATTAACGCCAAATTCCGCGAGCTGAAATCAAACGGCTACATCGTGGAGGGT 15912
| || || |||||||| |||||||| ||||| || |||||| | | || |
Sbjct 1188 ATCGAAACGATCAACGCCAAGTTCCGCGACCTGAAGTCGTCGGGCTACTTGATCGATGCC 1129
Query 15913 AAATGCTGGTTCGATGAGGAATCGAACGACAAGGAAACC---CTCAAGGCCGGGAAACTG 15969
|| ||||| ||| || || | | ||| | ||| ||| | || |||
Sbjct 1128 AACGCCTGGTACGA--CGGCAT-GGTCAACAGCGCCACCACGCTCGCCGATGGCGCGCTG 1072
Query 15970 TATATCGACTACGACTATACACCGGTTCCGCCACTGGAAAGCCTGACCCTGCGCCAGCGT 16029
||||| |||||||| || ||||| || || ||||| | | || ||| | ||
Sbjct 1071 CGCATCGATTACGACTACACGCCGGTGCCACCGCTGGAGAACTTGCAGCTGTACAAGAAG 1012
Query 16030 ATCACCGATAAATATCTGGTGAATCTGGCCGAATCGGTCAACAGCTAAGG----AGCCTG 16085
|||||| | || |||| | | |||||| |||||| ||| | ||||
Sbjct 1011 ATCACCACCAGCTACCTGGCCGACTTCGCCGAACGCGTCAACGCGTAACGCACCCGCCTC 952
Query 16086 A-----------AACAACATGGCACTACCCCGTAAACTCAAATACCTGAATATGTTCAAT 16134
| ||| |||||| | ||| ||||||||| || || |||||||
Sbjct 951 AGATTCCCGGAGAACCCCATGGCTTTGCCCAAGAAACTCAAAGCGCTCAACCTGTTCAAC 892
Query 16135 GACGGCCTCAGCTACATGGG---TGTTGTTGAATCCGTGACGCTGCCGAAACTGACCCGC 16191
||||| ||||| | || || || ||| |||| |||||| | ||| |||||
Sbjct 891 GACGGTGAGAGCTATCTCGGCCAGGTGGTCGAA---GTGAAGCTGCCCACGCTGTCCCGC 835
Query 16192 AAGCTCGAAAACTATCGCGGCGGCGGTATGAATGGCGCGGCAGCGATTGACCTCGGCCTC 16251
||| | || | |||||||||||||||||||||||| ||| | || ||| ||||||
Sbjct 834 AAGATGGAGGAGTATCGCGGCGGCGGTATGAATGGCCCGGTCGACATCGACTTCGGCCAG 775
Query 16252 GACGATGATGCGCTCACCGTCGAATGGTCTGTCGGTGGCCTGCCTGATGTGGCTC-TGTG 16310
|| || ||| || | |||||||| ||| | |||||||| | | |
Sbjct 774 GA-GAAGAT-CGAGC----TCGAATGGAAGTGCGG----CGGCCTGATGCGCAGCGTACT 725
Query 16311 GGCGCAGTACGCCGCC-CCGGGCGCTGATGCTGTGCCGCTGCGTTTTGCTGGTTCTTACC 16369
| ||||||| |||| || || | | || |||| |||||| ||||| || | ||||
Sbjct 724 GAATCAGTACGGCGCCACCACGCAC-AACGCCGTGCAGCTGCGCTTTGCCGGCGCCTACC 666
Query 16370 AGCGTGACGACACCGGCGAAATCGTGGCGGTCGAGGTGGTCATGCGTGGCCGTCATAAAG 16429
|||| ||||| || ||| | | ||||| || | || |||| |||||||| || |
Sbjct 665 AGCGCGACGATTCCACCGAGGTGGATGCGGTGGAAATTGTTGTGCGCGGCCGTCACAAGG 606
Query 16430 AAATCGA 16436
| || ||
Sbjct 605 AGATTGA 599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97899547317736
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