Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq6992 188 1e-43 >seq6992 Length=1569 Score = 188 bits (208), Expect = 1e-43 Identities = 634/967 (66%), Gaps = 54/967 (6%) Strand=Plus/Minus Query 15500 CGGCTTACGCCACTGCGCGTGCACTCGGCCTGCGTGCTTACATCG--ACCAGACTGTCGG 15557 |||| || |||||||||||||| |||||||||||||| | |||| ||| || | || Sbjct 1541 CGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCGACACCGAACAG--GG 1484 Query 15558 CTGGCACAAAACCCTGTCTAACGTTGGTGTACAGGGCGTTACCGGCATCAGCGCCTCAGT 15617 ||||||||| | |||||| ||||| || ||||| ||||||||| | || Sbjct 1483 CTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCATCTCCAAGGATGT 1424 Query 15618 GTTCTGGGATTTGCAGGCATCCGG-CACCGATGCTGACCTGCTCAACGAGGCCGGGGTTA 15676 | |||||| |||||| |||||| ||||||||| | | | |||||||||| || | | Sbjct 1423 GCATTGGGATCTGCAGG-ATCCGGCCACCGATGCCGGCATCCTCAACGAGGGCGACATCA 1365 Query 15677 CAACGCTGGT-ACG--CAAGGACGGTTTCCGCTTCTGGGGTAACCGCACCTGCTCGGATG 15733 | |||||||| ||| || |||| ||||||||||| ||||| ||| |||| | Sbjct 1364 CCACGCTGGTGACGTTCA---ACGGCCAGCGCTTCTGGGGATCGCGCACGTGCGCGGAGG 1308 Query 15734 ACCCGCTTTTTCTGTTTGAGAACTACACTCGCACCGCGCAGGTACTGGCCGACACGATGG 15793 || | || || |||| ||| |||||||||||| | ||||||||||| || | Sbjct 1307 ACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATCG 1248 Query 15794 CCG-AGGCGCACATGTGGGCGGTCGACAAGCCCATTACCGCCACGCTCATTCGTGACATT 15852 ||| ||||| || |||||||| || || | || |||| | | || | Sbjct 1247 CCGAAGGCG-TGGCGTTCTACGTCGACAAACCGATGCACCCCTCGCTGGTCAGGGATCTG 1189 Query 15853 GTTGACGGCATTAACGCCAAATTCCGCGAGCTGAAATCAAACGGCTACATCGTGGAGGGT 15912 | || || |||||||| |||||||| ||||| || |||||| | | || | Sbjct 1188 ATCGAAACGATCAACGCCAAGTTCCGCGACCTGAAGTCGTCGGGCTACTTGATCGATGCC 1129 Query 15913 AAATGCTGGTTCGATGAGGAATCGAACGACAAGGAAACC---CTCAAGGCCGGGAAACTG 15969 || ||||| ||| || || | | ||| | ||| ||| | || ||| Sbjct 1128 AACGCCTGGTACGA--CGGCAT-GGTCAACAGCGCCACCACGCTCGCCGATGGCGCGCTG 1072 Query 15970 TATATCGACTACGACTATACACCGGTTCCGCCACTGGAAAGCCTGACCCTGCGCCAGCGT 16029 ||||| |||||||| || ||||| || || ||||| | | || ||| | || Sbjct 1071 CGCATCGATTACGACTACACGCCGGTGCCACCGCTGGAGAACTTGCAGCTGTACAAGAAG 1012 Query 16030 ATCACCGATAAATATCTGGTGAATCTGGCCGAATCGGTCAACAGCTAAGG----AGCCTG 16085 |||||| | || |||| | | |||||| |||||| ||| | |||| Sbjct 1011 ATCACCACCAGCTACCTGGCCGACTTCGCCGAACGCGTCAACGCGTAACGCACCCGCCTC 952 Query 16086 A-----------AACAACATGGCACTACCCCGTAAACTCAAATACCTGAATATGTTCAAT 16134 | ||| |||||| | ||| ||||||||| || || ||||||| Sbjct 951 AGATTCCCGGAGAACCCCATGGCTTTGCCCAAGAAACTCAAAGCGCTCAACCTGTTCAAC 892 Query 16135 GACGGCCTCAGCTACATGGG---TGTTGTTGAATCCGTGACGCTGCCGAAACTGACCCGC 16191 ||||| ||||| | || || || ||| |||| |||||| | ||| ||||| Sbjct 891 GACGGTGAGAGCTATCTCGGCCAGGTGGTCGAA---GTGAAGCTGCCCACGCTGTCCCGC 835 Query 16192 AAGCTCGAAAACTATCGCGGCGGCGGTATGAATGGCGCGGCAGCGATTGACCTCGGCCTC 16251 ||| | || | |||||||||||||||||||||||| ||| | || ||| |||||| Sbjct 834 AAGATGGAGGAGTATCGCGGCGGCGGTATGAATGGCCCGGTCGACATCGACTTCGGCCAG 775 Query 16252 GACGATGATGCGCTCACCGTCGAATGGTCTGTCGGTGGCCTGCCTGATGTGGCTC-TGTG 16310 || || ||| || | |||||||| ||| | |||||||| | | | Sbjct 774 GA-GAAGAT-CGAGC----TCGAATGGAAGTGCGG----CGGCCTGATGCGCAGCGTACT 725 Query 16311 GGCGCAGTACGCCGCC-CCGGGCGCTGATGCTGTGCCGCTGCGTTTTGCTGGTTCTTACC 16369 | ||||||| |||| || || | | || |||| |||||| ||||| || | |||| Sbjct 724 GAATCAGTACGGCGCCACCACGCAC-AACGCCGTGCAGCTGCGCTTTGCCGGCGCCTACC 666 Query 16370 AGCGTGACGACACCGGCGAAATCGTGGCGGTCGAGGTGGTCATGCGTGGCCGTCATAAAG 16429 |||| ||||| || ||| | | ||||| || | || |||| |||||||| || | Sbjct 665 AGCGCGACGATTCCACCGAGGTGGATGCGGTGGAAATTGTTGTGCGCGGCCGTCACAAGG 606 Query 16430 AAATCGA 16436 | || || Sbjct 605 AGATTGA 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97899547317736